View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509R-Insertion-6 (Length: 677)
Name: NF1509R-Insertion-6
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Complemental strand, 49206434 - 49205898
Alignment:
| Q |
9 |
acatccaccaccaacaacaaaataaattgaaatcaaatcatgcttttcgcttctactacgtcctttgacaccatccatcccttcaacttttttcctctcc |
108 |
Q |
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| T |
49206434 |
acatccaccaccaacaacaaaataaattgaaatcaaatcatgcttttcgcttctactacgtcctttgacaccatccatcccttcaacttttttcctctcc |
49206335 |
T |
|
| Q |
109 |
tggacatcatccctctcaccgctattgccgtgccgctgctcaaccatcatctctgcaattctcctctgtctgatttttatcatcctaaccgctaaatttt |
208 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206334 |
tggacaccatccctctcaccgctattgccgtgccgctgctcaaccatcatcactgcaattctcctctgtctgatttttatcatcctaaccgctaaatttt |
49206235 |
T |
|
| Q |
209 |
atattattgataatttaaatagaagacgactctttgagaaatttacgtttttattttattttatcaggagtccatttgacagtcctgattttaatatatg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49206234 |
atattattgataatttaaatagaagacgactctttgaaaaatttacgtttttattttattttatcaggagtccatttgacagtcttgattttaatatatg |
49206135 |
T |
|
| Q |
309 |
atatattcaatccgctt---nnnnnnnnngactacttttagtcttttacaaacaatacacgatgtgtcatatatatggtacactaatacaccatgcgtgg |
405 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49206134 |
atatattcaatccgcttaaaaaaaaaaaagactacttttagtcttttacaaacaatacacgatgtgtcatatatatggtacactaatacaccatgcgagg |
49206035 |
T |
|
| Q |
406 |
tattttgaataatccccatttcccttatatgttatagaaggaccacttttgtattgtaataagtagtaaatgcatacccctnnnnnnnnnnnncataaat |
505 |
Q |
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| T |
49206034 |
tattttgaataatccccatttccattatatgttatagaaggaccacttttgtattgtaataagtagtaaatgcatacccctaaaaagaaaaaacgtaaat |
49205935 |
T |
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| Q |
506 |
gcattaatatattttgcacatgcatggtcagaaataa |
542 |
Q |
| |
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| T |
49205934 |
gcattaatatattttgcacatgcatggtcagaaataa |
49205898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 541 - 677
Target Start/End: Complemental strand, 49205872 - 49205736
Alignment:
| Q |
541 |
aaaggctattattaccagaacccatttatgaataacttgttaagcaagtttaagtccaacgtcattaactttcannnnnnngttctcatatcaaaataaa |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49205872 |
aaaggctattattaccagaacccatttatgaataacttgttaagcaagtttaagtccaacgtcattaactttcatttttttgttctcatatcaaaataaa |
49205773 |
T |
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| Q |
641 |
attgataataaaacaaagtagtagctctttaaagttg |
677 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
49205772 |
attgataataaaacaaagtagtagctctttaaagttg |
49205736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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