View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509R-Insertion-7 (Length: 555)
Name: NF1509R-Insertion-7
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 184 - 555
Target Start/End: Original strand, 43531218 - 43531586
Alignment:
| Q |
184 |
tttaatacaaggtaagtttacttaggagacaagtaaagtctgatcaatgaataatattttatttaaatatcaaatttggatactatccaaataatttgat |
283 |
Q |
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| T |
43531218 |
tttaatacaaggtaagtttacttaggagacaagtaaagtctgatcaatgaata---ttttatttaaatatcaaatttggatactatcgaaataattcgat |
43531314 |
T |
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| Q |
284 |
cttagctgaaatgcattaaccacttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaa |
383 |
Q |
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| T |
43531315 |
cttagctgaaatgcattaaccacttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaa |
43531414 |
T |
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| Q |
384 |
agaacttgtgtgattctcaaccagctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctcccc |
483 |
Q |
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| T |
43531415 |
agaacttgtgtgattctcaaccagctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctcccc |
43531514 |
T |
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| Q |
484 |
actgtcttttacgtgaacgaaccttagacttcacttcttcatcaagtggaattggaaccattagctttttct |
555 |
Q |
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| T |
43531515 |
attgtcttttacgtgaacgaaccttagacttcacttcttcatcaagtggaattggaaccattagctttttct |
43531586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 43531092 - 43531208
Alignment:
| Q |
8 |
aatgtgaatattgctgtgaacacaggaaaaaatccccaaaacaccgcaataaagaaaagcaatcctgcctacaatcaaaaaaggtcaagaatcaagattg |
107 |
Q |
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| T |
43531092 |
aatgtgaatattgctgtgaacacaggaaaaaatccccaaaacaccgcaataaagaaaagcaatcctgcctacaatcaaaaaaggtcaagaatcaagattg |
43531191 |
T |
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| Q |
108 |
taacttccaacaaggtc |
124 |
Q |
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| T |
43531192 |
taacttccaacaaggtc |
43531208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 307 - 494
Target Start/End: Complemental strand, 24128357 - 24128170
Alignment:
| Q |
307 |
ttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaacca |
406 |
Q |
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| T |
24128357 |
ttacctgatcttgcagatcttttgggttcttagcatcggattgccaccagagtaatcctaagatgattgcagtggataaaacttgtgtgattcttaacca |
24128258 |
T |
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| Q |
407 |
gctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttta |
494 |
Q |
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| T |
24128257 |
gctaaaatagtcatgcctcctttccttgattcctctccaaaaaagtatggaaaattgttcatcccatcttgctccccattgtctttta |
24128170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 24146122 - 24145936
Alignment:
| Q |
307 |
ttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaacca |
406 |
Q |
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| T |
24146122 |
ttacctgatcttgcagatcttttgggttttcagcatctgattgccaccagagtgatcctaagatgattgcagtggataaaacttgtgtgattcttaacca |
24146023 |
T |
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| Q |
407 |
gctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttt |
493 |
Q |
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| T |
24146022 |
gctaaagtagtcatgcttcctttccttgattcctctgcaaaaaagtatggaaaattgttcatcccaacttgctccccattgtctttt |
24145936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24128663 - 24128594
Alignment:
| Q |
8 |
aatgtgaatattgctgtgaacacaggaaaaaatccccaaaacaccgcaataaagaaaagcaatcctgcct |
77 |
Q |
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||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||| || |||||||||| |
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| T |
24128663 |
aatgtaaatattgctgtaaaaactggaaagaatccccagaacaccgcaataaagaatagtaatcctgcct |
24128594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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