View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-8 (Length: 540)

Name: NF1509R-Insertion-8
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-8
NF1509R-Insertion-8
[»] chr8 (19 HSPs)
chr8 (213-540)||(12119013-12119340)
chr8 (9-214)||(12119392-12119602)
chr8 (34-130)||(14690715-14690811)
chr8 (286-346)||(22548419-22548479)
chr8 (286-356)||(32292157-32292227)
chr8 (286-356)||(34308339-34308409)
chr8 (286-356)||(34308795-34308865)
chr8 (286-346)||(41658975-41659035)
chr8 (301-356)||(22026611-22026666)
chr8 (286-335)||(12100906-12100955)
chr8 (286-335)||(17103298-17103347)
chr8 (297-346)||(22548865-22548914)
chr8 (286-330)||(21315996-21316040)
chr8 (297-335)||(25148193-25148231)
chr8 (286-356)||(27022199-27022269)
chr8 (297-346)||(25147763-25147811)
chr8 (286-346)||(6466472-6466532)
chr8 (286-330)||(9251101-9251145)
chr8 (304-356)||(12827114-12827166)
[»] chr7 (19 HSPs)
chr7 (398-503)||(20524563-20524668)
chr7 (286-346)||(28496070-28496130)
chr7 (286-346)||(43233173-43233233)
chr7 (286-356)||(9125175-9125245)
chr7 (286-355)||(2193472-2193541)
chr7 (286-355)||(28495480-28495549)
chr7 (286-346)||(42515760-42515820)
chr7 (297-356)||(13122364-13122423)
chr7 (297-356)||(13124995-13125054)
chr7 (286-356)||(7646338-7646408)
chr7 (286-356)||(36422467-36422537)
chr7 (31-104)||(20524700-20524773)
chr7 (284-337)||(29038899-29038952)
chr7 (286-337)||(6747955-6748006)
chr7 (286-337)||(42515308-42515359)
chr7 (286-356)||(18833502-18833572)
chr7 (158-211)||(25182504-25182557)
chr7 (297-337)||(2941636-2941676)
chr7 (302-346)||(26419105-26419149)
[»] chr6 (18 HSPs)
chr6 (398-503)||(30643450-30643555)
chr6 (286-356)||(17027391-17027461)
chr6 (286-346)||(20850537-20850597)
chr6 (286-356)||(9352278-9352348)
chr6 (278-346)||(2681090-2681158)
chr6 (286-356)||(7912094-7912164)
chr6 (297-346)||(13492560-13492609)
chr6 (286-346)||(7912526-7912586)
chr6 (301-356)||(13191373-13191428)
chr6 (278-345)||(17730980-17731047)
chr6 (297-356)||(23776667-23776726)
chr6 (298-356)||(9440717-9440775)
chr6 (286-335)||(20126063-20126112)
chr6 (297-346)||(23986187-23986236)
chr6 (158-211)||(23986267-23986320)
chr6 (286-335)||(27334309-27334358)
chr6 (286-335)||(27395049-27395098)
chr6 (28-104)||(30643340-30643416)
[»] chr2 (12 HSPs)
chr2 (419-503)||(11924194-11924278)
chr2 (286-356)||(32377767-32377837)
chr2 (286-356)||(30966450-30966520)
chr2 (286-356)||(32377576-32377646)
chr2 (286-356)||(30966906-30966976)
chr2 (286-335)||(24818541-24818590)
chr2 (286-335)||(25337878-25337927)
chr2 (173-214)||(3804350-3804391)
chr2 (278-323)||(8181254-8181299)
chr2 (286-335)||(16379153-16379202)
chr2 (286-330)||(16379609-16379653)
chr2 (286-330)||(33771217-33771261)
[»] chr3 (19 HSPs)
chr3 (280-356)||(14820364-14820440)
chr3 (298-356)||(16811607-16811665)
chr3 (279-356)||(13149959-13150036)
chr3 (297-356)||(27187189-27187248)
chr3 (286-356)||(11179894-11179964)
chr3 (286-336)||(28561961-28562011)
chr3 (286-356)||(50347962-50348032)
chr3 (286-355)||(32386595-32386664)
chr3 (286-335)||(39653380-39653429)
chr3 (298-346)||(16811153-16811201)
chr3 (297-356)||(14814176-14814235)
chr3 (286-356)||(8067496-8067566)
chr3 (286-356)||(13150414-13150484)
chr3 (286-335)||(25239008-25239057)
chr3 (297-346)||(31284146-31284195)
chr3 (286-335)||(37045248-37045297)
chr3 (286-335)||(41473757-41473806)
chr3 (278-330)||(20885003-20885055)
chr3 (166-214)||(26436082-26436130)
[»] scaffold0322 (1 HSPs)
scaffold0322 (286-356)||(19182-19252)
[»] chr5 (19 HSPs)
chr5 (286-356)||(8641895-8641965)
chr5 (286-346)||(3886471-3886531)
chr5 (286-356)||(3886917-3886987)
chr5 (286-356)||(34371828-34371898)
chr5 (286-343)||(2474165-2474222)
chr5 (297-356)||(2474632-2474691)
chr5 (278-337)||(29679986-29680045)
chr5 (297-356)||(34372295-34372354)
chr5 (302-356)||(15512872-15512926)
chr5 (286-335)||(17445336-17445385)
chr5 (286-346)||(189284-189344)
chr5 (278-330)||(30684897-30684949)
chr5 (297-356)||(21883945-21884004)
chr5 (286-356)||(2194020-2194090)
chr5 (286-356)||(42788506-42788576)
chr5 (286-335)||(1880292-1880341)
chr5 (286-335)||(10927284-10927333)
chr5 (286-330)||(1822122-1822166)
chr5 (286-346)||(20858412-20858472)
[»] chr1 (23 HSPs)
chr1 (286-356)||(20054396-20054466)
chr1 (286-356)||(20054852-20054922)
chr1 (286-356)||(20055308-20055378)
chr1 (286-356)||(20055764-20055834)
chr1 (286-356)||(20056220-20056290)
chr1 (286-356)||(20056676-20056746)
chr1 (286-356)||(20057123-20057193)
chr1 (286-356)||(20057579-20057649)
chr1 (297-356)||(16451793-16451852)
chr1 (297-356)||(16460946-16461005)
chr1 (286-356)||(50002935-50003005)
chr1 (286-355)||(20845522-20845591)
chr1 (287-356)||(35759924-35759993)
chr1 (286-346)||(50002577-50002637)
chr1 (286-356)||(20053940-20054010)
chr1 (286-356)||(20060200-20060270)
chr1 (286-356)||(38341122-38341192)
chr1 (286-356)||(52250422-52250492)
chr1 (286-346)||(35759478-35759538)
chr1 (286-346)||(46693605-46693665)
chr1 (297-356)||(52250770-52250829)
chr1 (297-356)||(52251107-52251166)
chr1 (286-343)||(49996553-49996610)
[»] scaffold0389 (1 HSPs)
scaffold0389 (286-346)||(13403-13463)
[»] chr4 (16 HSPs)
chr4 (286-346)||(4127282-4127342)
chr4 (286-346)||(15268037-15268097)
chr4 (287-346)||(35477877-35477936)
chr4 (286-355)||(24629291-24629360)
chr4 (286-346)||(35871843-35871903)
chr4 (286-356)||(23350137-23350207)
chr4 (278-356)||(50398848-50398926)
chr4 (286-346)||(14571552-14571612)
chr4 (286-346)||(14572018-14572078)
chr4 (286-346)||(49998852-49998912)
chr4 (300-355)||(50399334-50399389)
chr4 (286-356)||(7678476-7678546)
chr4 (286-327)||(4127772-4127813)
chr4 (286-335)||(23943117-23943166)
chr4 (286-330)||(3169422-3169466)
chr4 (286-330)||(8467693-8467737)
[»] scaffold0022 (3 HSPs)
scaffold0022 (286-356)||(162994-163064)
scaffold0022 (286-346)||(162547-162608)
scaffold0022 (286-346)||(163287-163347)
[»] scaffold0217 (1 HSPs)
scaffold0217 (286-343)||(526-583)
[»] scaffold0243 (1 HSPs)
scaffold0243 (286-356)||(1436-1506)
[»] scaffold0020 (1 HSPs)
scaffold0020 (286-356)||(107323-107393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (286-356)||(154973-155043)
scaffold0002 (286-356)||(154518-154588)
[»] scaffold0065 (1 HSPs)
scaffold0065 (297-346)||(62977-63026)
[»] scaffold0018 (1 HSPs)
scaffold0018 (286-335)||(10515-10564)
[»] scaffold0168 (1 HSPs)
scaffold0168 (286-346)||(2958-3018)
[»] scaffold0005 (2 HSPs)
scaffold0005 (286-346)||(245298-245358)
scaffold0005 (286-346)||(245764-245824)
[»] scaffold1519 (1 HSPs)
scaffold1519 (286-356)||(1561-1631)
[»] scaffold0499 (1 HSPs)
scaffold0499 (298-335)||(1932-1969)
[»] scaffold0333 (2 HSPs)
scaffold0333 (286-335)||(4776-4825)
scaffold0333 (286-335)||(5236-5285)
[»] scaffold0024 (1 HSPs)
scaffold0024 (286-355)||(105936-106005)
[»] scaffold0277 (1 HSPs)
scaffold0277 (286-330)||(14588-14632)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 213 - 540
Target Start/End: Complemental strand, 12119340 - 12119013
Alignment:
Q  213 tgcttgacttggagtagtatttggataggcgacgttctaggaaattcccaaagaagtatgtgagtcgtgcaactgaggacaatgcacgctgaaaatactc 312  Q
    |||||||||||||||||||||||||| ||| ||||||| |||| |||||||| ||||||| ||||| ||| | ||||||||| ||||  |||||||||||    
T  12119340 tgcttgacttggagtagtatttggattggcaacgttctgggaagttcccaaaaaagtatgcgagtcatgcgagtgaggacaaagcacattgaaaatactc 12119241  T
Q  313 gtgttggtttgtggggtccgtcggcgatcctgaattcagtctggcgcgataaatttcccactgaatcatattttttaactagtatatttcttttgttgta 412  Q
    ||||||||||||||||| ||| || ||||||||| ||||||| || |  ||   ||| |||||||||||||||| ||||||||||||||||| |||| ||    
T  12119240 gtgttggtttgtggggttcgttggtgatcctgaaatcagtctagcacattacgattctcactgaatcatattttctaactagtatatttcttctgttcta 12119141  T
Q  413 acctatttcttaatctagggagcttgcatatcaaattgctgaacagtgtgaagctctaggttctgaaattggtgtcaagtgtgctgtggtgcgtttctaa 512  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12119140 acctatttcttaatgtagggagcttgcatatcaagttcctgaacagtttgaagctctaggttctgaaattggtgtcaagtgtgctgtggtgagtttctaa 12119041  T
Q  513 tgcacgcatgatttttatgtcttcctgt 540  Q
    |||| |||||||||||||||| ||||||    
T  12119040 tgcaagcatgatttttatgtcgtcctgt 12119013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 12119602 - 12119392
Alignment:
Q  9 agatgcaccacgacacgggttctttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattcaattt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  12119602 agatgcaccacgacacgggttctttgcttgtgtaatctctcccacaaggtttgatacttcgatacgtcattgtagatttagtattcatataattcaattt 12119503  T
Q  109 --tattagattaatttttaacgtcccgcttttaggattgcggaccgaccccacttcc---cagaaggtcatccatccaaatattacgctaagtcaagcac 203  Q
      ||||||||||||||||||||||||||||| |||||||| || |||||||||||||    ||||||| |||||||||||||| || ||||| |||||||    
T  12119502 tatattagattaatttttaacgtcccgctttcaggattgccgatcgaccccacttcctagaagaaggttatccatccaaatatcactctaaggcaagcac 12119403  T
Q  204 acttaactatg 214  Q
      |||||||||    
T  12119402 gtttaactatg 12119392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 14690811 - 14690715
Alignment:
Q  34 gcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattcaattttattagattaatttttaacgtc 130  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||| |  ||||||||| |||||||    
T  14690811 gcttgtgtaatctctcccacaaggtttgatactttgatacctgatcatagatttaatattcatataattcaattttgtccgattaatttgtaacgtc 14690715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 22548479 - 22548419
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  22548479 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 22548419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 32292157 - 32292227
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||||| ||||||||  ||||||||    
T  32292157 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcggcaatcctgaaagcagtctgg 32292227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 34308409 - 34308339
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| ||||||| |||||||||||||| |||||| ||||||||  ||||||||    
T  34308409 tgaggacaaaacacgctgaaaagactcgtgctggtttgtggggtcagtcggcaatcctgaaagcagtctgg 34308339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 34308865 - 34308795
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||| || ||||||||  ||||||||    
T  34308865 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcagcaatcctgaaagcagtctgg 34308795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 41659035 - 41658975
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| || |||||    
T  41659035 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatgctgaa 41658975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 22026611 - 22026666
Alignment:
Q  301 ctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  22026611 ctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 22026666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 12100906 - 12100955
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  12100906 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 12100955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 17103298 - 17103347
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  17103298 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 17103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 22548914 - 22548865
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||| | |||||||||||||||||||||| |||||| ||||||||    
T  22548914 cacgctgaacagactcgtgttggtttgtggggtcagtcggcaatcctgaa 22548865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 21316040 - 21315996
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||    
T  21316040 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtc 21315996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 25148193 - 25148231
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  25148193 cacgctgaaaagactcgtgttggtttgtggggtcagtcg 25148231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 27022269 - 27022199
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||||| |||| |||||||||||||||||||||| |||| | ||||| ||  ||||||||    
T  27022269 tgaggacaaaacacgctaaaaagactcgtgttggtttgtggggtcagtcgacaatcctaaaagcagtctgg 27022199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 25147763 - 25147811
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||||||||    
T  25147763 cacgctgaaaagactcgtgttggtttgt-gggtcagtcggcaatcctgaa 25147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 6466472 - 6466532
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||| ||||||| |||| ||| |||||||||||||||| | |||||| || |||||    
T  6466472 tgaggacaaagcacgctaaaaagacttgtgttggtttgtggggccagtcggcaatactgaa 6466532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 9251101 - 9251145
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  ||||||||||| ||| ||||||||||||||||||    
T  9251101 tgaggacaaaacacgctgaaaaaacttgtgttggtttgtggggtc 9251145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 12827166 - 12827114
Alignment:
Q  304 aaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||| |||||||||||||||||||||| |||| | ||||||||  ||||||||    
T  12827166 aaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaagcagtctgg 12827114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 398 - 503
Target Start/End: Complemental strand, 20524668 - 20524563
Alignment:
Q  398 atttcttttgttgtaacctatttcttaatctagggagcttgcatatcaaattgctgaacagtgtgaagctctaggttctgaaattggtgtcaagtgtgct 497  Q
    ||||||| |||| |||||| |||||| ||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||    
T  20524668 atttcttctgttctaacctttttcttgatctagggagcttgcaattcaaatttctgaacagtttgaagctctaggttctgaaatcggtgtcaagtgcgct 20524569  T
Q  498 gtggtg 503  Q
    ||||||    
T  20524568 gtggtg 20524563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 28496070 - 28496130
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  28496070 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 28496130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 43233173 - 43233233
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  43233173 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 43233233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 9125175 - 9125245
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  || |||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  9125175 tgaggacaaaacatgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 9125245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 2193472 - 2193541
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| |||||| ||||||||  |||||||    
T  2193472 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcggcaatcctgaaagcagtctg 2193541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 28495549 - 28495480
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  | ||||||||| |||||||||||||||||||||| |||||| ||||||||  |||||||    
T  28495549 tgaggacaaaacccgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctg 28495480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 42515760 - 42515820
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||| ||||    
T  42515760 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcttgaa 42515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 13122423 - 13122364
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| ||||||||||||||||||||||  ||||| ||||||||  ||||||||    
T  13122423 cacgctgaaaagactcgtgttggtttgtggggtcaatcggcaatcctgaaagcagtctgg 13122364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 13125054 - 13124995
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||  |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  13125054 cacgctgaaaggactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 13124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 7646408 - 7646338
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  7646408 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 7646338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 36422467 - 36422537
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  36422467 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 36422537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 20524773 - 20524700
Alignment:
Q  31 tttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattca 104  Q
    ||||| ||||| || |||||||||||||| |||||||||||| || ||  | |||||| |||||||||||||||    
T  20524773 tttgcatgtgtgatgtctcccacaaggttagatactttgataactgatcatggatttaatattcatataattca 20524700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 29038952 - 29038899
Alignment:
Q  284 actgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggc 337  Q
    |||||||||||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  29038952 actgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcggc 29038899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 6748006 - 6747955
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggc 337  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  6748006 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcggc 6747955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 42515308 - 42515359
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggc 337  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  42515308 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcggc 42515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 18833502 - 18833572
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||| |||||||| |  |||||| ||||||||  ||||||||    
T  18833502 tgaggacaaaacacgctgaaaagactcgtgttgatttgtgggataagtcggcaatcctgaaagcagtctgg 18833572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 25182557 - 25182504
Alignment:
Q  158 acttcccagaaggtcatccatccaaatattacgctaagtcaagcacacttaact 211  Q
    ||||||||||||||| |||||||||| | ||| | ||||||| |||||||||||    
T  25182557 acttcccagaaggtcctccatccaaagactactccaagtcaaacacacttaact 25182504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 2941676 - 2941636
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggc 337  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  2941676 cacgctgaaaagactcgtgttggtttgtgcggtcagtcggc 2941636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 26419149 - 26419105
Alignment:
Q  302 tgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||| |||||||||||||||||||||| |||| | ||||||||    
T  26419149 tgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaa 26419105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 30643450 - 30643555
Alignment:
Q  398 atttcttttgttgtaacctatttcttaatctagggagcttgcatatcaaattgctgaacagtgtgaagctctaggttctgaaattggtgtcaagtgtgct 497  Q
    ||||||| | || ||||||||||| | ||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||    
T  30643450 atttcttctcttctaacctatttcgtgatctagggagcttgcaattcaaatttctgaacagtttgaagctctaggttctgaaatcggtgtcaagtgcgct 30643549  T
Q  498 gtggtg 503  Q
    ||||||    
T  30643550 gtggtg 30643555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 17027461 - 17027391
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  17027461 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 17027391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 20850537 - 20850597
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  20850537 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 20850597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 9352278 - 9352348
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  || |||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  9352278 tgaggacaaaacatgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 9352348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 2681158 - 2681090
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||| |||||||||  |||| ||| || |||||||||||||||||||||| |||||| ||||||||    
T  2681158 cgtgcaagtgaggacaaaacacgttgagaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 2681090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 7912094 - 7912164
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| ||| |||||||||||||||||| |||| | ||||||||  ||||||||    
T  7912094 tgaggacaaaacacgctgaaaagacttgtgttggtttgtggggtcagtcgacaatcctgaaagcagtctgg 7912164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 13492560 - 13492609
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||| ||||    
T  13492560 cacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcttgaa 13492609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 7912526 - 7912586
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||| ||||||||||||||||  |||||| ||||||||    
T  7912526 tgaggacaaaacacgctgaaaagactcatgttggtttgtggggttagtcggcaatcctgaa 7912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 13191428 - 13191373
Alignment:
Q  301 ctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||| |||||||||||||||||||||| |||||| ||| ||||  ||||||||    
T  13191428 ctgaaaagactcgtgttggtttgtggggtcagtcggcaatcttgaaagcagtctgg 13191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 17731047 - 17730980
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctga 345  Q
    ||||||| |||||||||  |||||| |||| |||||||||||||||| ||||| |||| | |||||||    
T  17731047 cgtgcaagtgaggacaaaacacgctaaaaagactcgtgttggtttgtagggtcagtcgacaatcctga 17730980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 23776667 - 23776726
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| | |||||||||||||||| ||| |||||| ||||||||  ||||||||    
T  23776667 cacgctgaaaagattcgtgttggtttgtggagtcagtcggcaatcctgaaagcagtctgg 23776726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 9440775 - 9440717
Alignment:
Q  298 acgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||| ||||||| |||||||||||||| |||||| ||| ||||  ||||||||    
T  9440775 acgctgaaaaaactcgtgctggtttgtggggtcagtcggcaatcttgaaagcagtctgg 9440717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 20126112 - 20126063
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||| ||||||| |||||||||||||||| ||||||||||    
T  20126112 tgaggacaaaacacactgaaaagactcgtgttggtttgtagggtccgtcg 20126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 23986236 - 23986187
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||||| ||| |||||||||||||||||| |||||| || |||||    
T  23986236 cacgctgaaaagacttgtgttggtttgtggggtcagtcggcaattctgaa 23986187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 23986267 - 23986320
Alignment:
Q  158 acttcccagaaggtcatccatccaaatattacgctaagtcaagcacacttaact 211  Q
    |||||||||||||||| |||||| || ||| | | |||||||||||||||||||    
T  23986267 acttcccagaaggtcacccatcccaaaattgctccaagtcaagcacacttaact 23986320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 27334309 - 27334358
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  27334309 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcg 27334358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 27395049 - 27395098
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  27395049 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcg 27395098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 30643340 - 30643416
Alignment:
Q  28 ttctttgcttgtgtaatctctcccacaaggtttgatactttgatacctcattgtagatttagtattcatataattca 104  Q
    |||||||| || || || |||||||||||||| ||||||| |||| || ||  | |||||| |||||||||||||||    
T  30643340 ttctttgcatgcgtgatgtctcccacaaggttagatacttcgataactgatcatggatttaatattcatataattca 30643416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 419 - 503
Target Start/End: Original strand, 11924194 - 11924278
Alignment:
Q  419 ttcttaatctagggagcttgcatatcaaattgctgaacagtgtgaagctctaggttctgaaattggtgtcaagtgtgctgtggtg 503  Q
    ||||||| |||||||||||||   ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  11924194 ttcttaaactagggagcttgccattcaaattgctgaacagtttgaagctctaggttctgaaaatggtgtcaagtgtgttgtggtg 11924278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 32377837 - 32377767
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  32377837 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 32377767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 30966450 - 30966520
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||| |||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  30966450 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 30966520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 32377646 - 32377576
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||| ||  ||||||||    
T  32377646 tgaggacaaaacacgctgaaaaaactcgtgttggtttgtggggtcagtcggcaatcctaaaagcagtctgg 32377576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 30966906 - 30966976
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||| |||||| |||||||||||||||||| ||| |||||| ||||||||  ||||||||    
T  30966906 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggagtcagtcggcaatcctgaaagcagtctgg 30966976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 24818541 - 24818590
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  24818541 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 24818590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 25337927 - 25337878
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  25337927 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 25337878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 3804350 - 3804391
Alignment:
Q  173 atccatccaaatattacgctaagtcaagcacacttaactatg 214  Q
    ||||||||||||||||| ||||||||  ||||||||||||||    
T  3804350 atccatccaaatattactctaagtcagacacacttaactatg 3804391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 8181299 - 8181254
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttg 323  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||||    
T  8181299 cgtgcaagtgaggacaaaacacgctgaaaagactcgtgttggtttg 8181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 16379153 - 16379202
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  16379153 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 16379202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 16379609 - 16379653
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||    
T  16379609 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtc 16379653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 33771217 - 33771261
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  ||| ||||||| ||||||||||||||||||||||    
T  33771217 tgaggacaaaacacactgaaaagactcgtgttggtttgtggggtc 33771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 14820364 - 14820440
Alignment:
Q  280 tgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||| |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  14820364 tgcaagtgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 14820440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 16811607 - 16811665
Alignment:
Q  298 acgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  16811607 acgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 16811665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 13150036 - 13149959
Alignment:
Q  279 gtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||| |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  13150036 gtgcaagtgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 13149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 27187248 - 27187189
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||||| || |||||  ||||||||    
T  27187248 cacgctgaaaagactcgtgttggtttgtggggtcagtcggcaattctgaaaacagtctgg 27187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 11179964 - 11179894
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  11179964 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 11179894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 28561961 - 28562011
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcgg 336  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||    
T  28561961 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgg 28562011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 50347962 - 50348032
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  50347962 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 50348032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 32386664 - 32386595
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  |||||| |||| |||||||||||||||||||||| |||||| ||| ||||  |||||||    
T  32386664 tgaggacaaaacacgctaaaaagactcgtgttggtttgtggggtcagtcggcaatcttgaaagcagtctg 32386595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 39653380 - 39653429
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  39653380 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 39653429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 16811153 - 16811201
Alignment:
Q  298 acgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||| | |||||||||||||||||||| |||||| ||||||||    
T  16811153 acgctgaaaagattcgtgttggtttgtggggtcggtcggcaatcctgaa 16811201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 14814176 - 14814235
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||  |||||| || |||||  ||||||||    
T  14814176 cacgctgaaaagactcgtgttggtttgtggggttagtcggcaatactgaaagcagtctgg 14814235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 8067496 - 8067566
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| ||||||||||||||||| ||||  ||||| ||||| ||  ||||||||    
T  8067496 tgaggacaaaacacgctgaaaagactcgtgttggtttgtgaggtcaatcggcaatcctaaaagcagtctgg 8067566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 13150484 - 13150414
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| |||| | || |||||  ||||||||    
T  13150484 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaagcagtctgg 13150414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 25239057 - 25239008
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  25239057 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 25239008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 31284195 - 31284146
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||| ||||    
T  31284195 cacgccgaaaagactcgtgttggtttgtggggtcagtcggcaatcatgaa 31284146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 37045248 - 37045297
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  37045248 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 37045297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 41473757 - 41473806
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| || ||||||||||||||||||| ||||    
T  41473757 tgaggacaaaacacgctgaaaagacccgtgttggtttgtggggtcagtcg 41473806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 20885055 - 20885003
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    ||||||| | |||||||  ||||||||||| |||||||||||||||| |||||    
T  20885055 cgtgcaagttaggacaaaacacgctgaaaagactcgtgttggtttgtagggtc 20885003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 26436082 - 26436130
Alignment:
Q  166 gaaggtcatccatccaaatattacgctaagtcaagcacacttaactatg 214  Q
    |||||||| ||||||||||| ||| |||| ||||| |||||||||||||    
T  26436082 gaaggtcacccatccaaatactactctaattcaagaacacttaactatg 26436130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 19182 - 19252
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  19182 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 19252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 8641965 - 8641895
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  8641965 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 8641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 3886531 - 3886471
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  3886531 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 3886471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 3886987 - 3886917
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||||||| || |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  3886987 tgaggacaaaacacgctgacaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 3886917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 34371828 - 34371898
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||| |||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  34371828 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 34371898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 2474165 - 2474222
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcct 343  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  2474165 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcct 2474222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 2474632 - 2474691
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||| ||  ||||||||    
T  2474632 cacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctaaaagcagtctgg 2474691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 29680045 - 29679986
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggc 337  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  29680045 cgtgcaaatgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcggc 29679986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 34372295 - 34372354
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||||||||||||||||||| ||| ||| |||||| ||||||||  ||||||||    
T  34372295 cacgctgaaaatactcgtgttggtttatggcgtcagtcggcaatcctgaaagcagtctgg 34372354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 15512926 - 15512872
Alignment:
Q  302 tgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  15512926 tgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 15512872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 17445385 - 17445336
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  17445385 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 17445336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 189284 - 189344
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| ||||||||||||||||||| || ||| || ||||||||    
T  189284 tgaggacaaaacacgctgaaaagactcgtgttggtttgtgggatcagtccgcaatcctgaa 189344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 30684949 - 30684897
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||  ||||||||  ||||||||||| ||||||||||||||||||||||    
T  30684949 cgtgcaagcgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtc 30684897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 21884004 - 21883945
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||| | ||| ||||  ||||||||    
T  21884004 cacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcttgaaagcagtctgg 21883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 2194020 - 2194090
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| || ||||||||||||||||||| |||| | || |||||  ||||||||    
T  2194020 tgaggacaaaacacgctgaaaagacccgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 2194090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 42788576 - 42788506
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| || ||||||||||||||| ||| |||| | ||||||||  ||||||||    
T  42788576 tgaggacaaaacacgctgaaaagacccgtgttggtttgtggagtcagtcgacaatcctgaaagcagtctgg 42788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 1880292 - 1880341
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| ||||||||||||||||  |||||||||    
T  1880292 tgaggacaaaacacgctgaaaagactcgtgttggtttgtaaggtccgtcg 1880341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 10927333 - 10927284
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  10927333 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcggtcg 10927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 1822122 - 1822166
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  ||||||||||| |||||||||||||||| |||||    
T  1822122 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtc 1822166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 20858472 - 20858412
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||||||||||||||||||||| |||||  |||| |||| | ||||||||    
T  20858472 tgaggacaaaacacgctgaaaatactcgtgttgatttgttaggtcagtcgacaatcctgaa 20858412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20054466 - 20054396
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20054466 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20054396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20054922 - 20054852
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20054922 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20054852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20055378 - 20055308
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20055378 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20055308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20055834 - 20055764
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20055834 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20055764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20056290 - 20056220
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20056290 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20056220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20056746 - 20056676
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20056746 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20057193 - 20057123
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20057193 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20057123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20057649 - 20057579
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20057649 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20057579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 16451852 - 16451793
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  16451852 cacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 16451793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 16461005 - 16460946
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  16461005 cacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 16460946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 50003005 - 50002935
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||| || ||||||||  ||||||||    
T  50003005 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcagcaatcctgaaagcagtctgg 50002935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 20845591 - 20845522
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||| ||||  |||||||    
T  20845591 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcttgaaagcagtctg 20845522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 35759993 - 35759924
Alignment:
Q  287 gaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||| ||||  ||||||||    
T  35759993 gaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcatgaaagcagtctgg 35759924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 50002637 - 50002577
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | ||||||||    
T  50002637 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaa 50002577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20054010 - 20053940
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  || |||||||| |||||||||||||||||||||| |||| | ||||||||  ||||||||    
T  20054010 tgaggacaaaacatgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaagcagtctgg 20053940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 20060270 - 20060200
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||| || ||| |||||||||||||||||||||| |||||| ||||||||  ||||||||    
T  20060270 tgaggacaaaacacgatggaaagactcgtgttggtttgtggggtcagtcggcaatcctgaaagcagtctgg 20060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 38341122 - 38341192
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||| ||||| |||||||||||||| ||||||| |||||| ||||||||  ||||||||    
T  38341122 tgaggacaaaacacgcggaaaagactcgtgttggtttatggggtcagtcggcaatcctgaaagcagtctgg 38341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 52250422 - 52250492
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  52250422 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 52250492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 35759538 - 35759478
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||| ||||||| |||||| ||| ||||    
T  35759538 tgaggacaaaacacgctgaaaagactcgtgttggtttttggggtcagtcggcaatcatgaa 35759478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 46693665 - 46693605
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| || ||||||||||||||||||| |||| | ||||||||    
T  46693665 tgaggacaaaacacgctgaaaagacccgtgttggtttgtggggtcagtcgacaatcctgaa 46693605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 52250770 - 52250829
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  52250770 cacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 52250829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 52251107 - 52251166
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  52251107 cacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 52251166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 49996610 - 49996553
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcct 343  Q
    |||||||||  ||||||||||| |||| |||| |||||||||||| |||||| |||||    
T  49996610 tgaggacaaaacacgctgaaaagactcttgttagtttgtggggtcagtcggcaatcct 49996553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 13463 - 13403
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  13463 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 13403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 4127342 - 4127282
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  4127342 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 4127282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 15268097 - 15268037
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  15268097 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 15268037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 35477877 - 35477936
Alignment:
Q  287 gaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  35477877 gaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 35477936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 24629360 - 24629291
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  ||||||||||| ||||||||| |||||||||||| |||||| ||||||||  |||||||    
T  24629360 tgaggacaaaacacgctgaaaagactcgtgttagtttgtggggtcagtcggcaatcctgaaagcagtctg 24629291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 35871843 - 35871903
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| ||||||||||||||||||| || |||||| ||||||||    
T  35871843 tgaggacaaaacacgctgaaaagactcgtgttggtttgtgggatcagtcggcaatcctgaa 35871903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 23350207 - 23350137
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||| ||||||| |||||||||||||||||||||| |||||| || |||||  ||||||||    
T  23350207 tgaggacaaaacacactgaaaagactcgtgttggtttgtggggtcagtcggcaattctgaaagcagtctgg 23350137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 50398926 - 50398848
Alignment:
Q  278 cgtgcaactgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    ||||||| |||||||||  |||| || ||| |||||||||||||||| ||||| |||||| ||||||||  ||||||||    
T  50398926 cgtgcaagtgaggacaaaacacgttggaaagactcgtgttggtttgtagggtcagtcggcaatcctgaaagcagtctgg 50398848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 14571612 - 14571552
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||| |||||| |||||||||||||||||||||| |||||  ||||||||    
T  14571612 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggggtcagtcgggaatcctgaa 14571552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 14572078 - 14572018
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||| |||||| ||||||||||||||| |||||| |||||| ||||||||    
T  14572078 tgaggacaaaacacggtgaaaagactcgtgttggtttgcggggtcagtcggcaatcctgaa 14572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 49998852 - 49998912
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||||||| | |||||| || |||||    
T  49998852 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggacagtcggcaattctgaa 49998912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 50399334 - 50399389
Alignment:
Q  300 gctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||| |||||||||||||||| ||||| |||||| ||||||||  |||||||    
T  50399334 gctgaaaagactcgtgttggtttgtagggtcagtcggcaatcctgaaagcagtctg 50399389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 7678546 - 7678476
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||| ||||||||||||| |||| | || |||||  ||||||||    
T  7678546 tgaggacaaaacacgctgaaaagactcgtgtaggtttgtggggtcagtcgacaatgctgaaagcagtctgg 7678476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 4127813 - 4127772
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggg 327  Q
    |||||||||  ||||||||||| |||||||||||||||||||    
T  4127813 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggg 4127772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 23943166 - 23943117
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  23943166 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 23943117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 3169422 - 3169466
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  |||| ||||||||||||||||||||||| |||||    
T  3169422 tgaggacaaaacacgttgaaaatactcgtgttggtttgtagggtc 3169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 8467737 - 8467693
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  |||| |||||| ||||||||||||||||||||||    
T  8467737 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggggtc 8467693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 163064 - 162994
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||| | |||||| ||||||||  ||||||||    
T  163064 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggccagtcggcaatcctgaaaacagtctgg 162994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 162608 - 162547
Alignment:
Q  286 tgaggacaatgcacgctgaaaat-actcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||||||||||  |||||||||||||||||||||| |||||| ||||||||    
T  162608 tgaggacaaaacacgctgaaaaagactcgtgttggtttgtggggtcagtcggcaatcctgaa 162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 163287 - 163347
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| |||| | ||||||||    
T  163287 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtctgtcgacaatcctgaa 163347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 526 - 583
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcct 343  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  526 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcggcaatcct 583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 1436 - 1506
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||| ||| |||| | ||||||||  ||||||||    
T  1436 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggcgtcagtcgacaatcctgaaagcagtctgg 1506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 107393 - 107323
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  || |||||||| |||||||||||||||||||||| |||||| || |||||  ||||||||    
T  107393 tgaggacaaaacatgctgaaaagactcgtgttggtttgtggggtcagtcggctattctgaaagcagtctgg 107323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 154973 - 155043
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| |||| | || |||||  ||||||||    
T  154973 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcgacaatgctgaaagcagtctgg 155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 154518 - 154588
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| |||| | || |||||  ||||||||    
T  154518 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaagcagtctgg 154588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 63026 - 62977
Alignment:
Q  297 cacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    ||||||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  63026 cacgctgaaaagactcgtattggtttgtggggtcagtcggcaatcctgaa 62977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 10515 - 10564
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||||||||| ||||    
T  10515 tgaggacaaaacacgctgaaaagactcgtgttggtttgtggggtcagtcg 10564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 2958 - 3018
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||| |||||| || |||||    
T  2958 tgaggacaaaacacgctgaaaagactcgtgttgatttgtggggtcagtcggcaatgctgaa 3018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 245298 - 245358
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||| |||||| ||||||||||||||| |||||| |||||| ||||||||    
T  245298 tgaggacaaaacacggtgaaaagactcgtgttggtttgcggggtcagtcggcaatcctgaa 245358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 245764 - 245824
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaa 346  Q
    |||||||||  |||| |||||| |||||||||||||||||||||| |||||  ||||||||    
T  245764 tgaggacaaaacacgttgaaaagactcgtgttggtttgtggggtcagtcgggaatcctgaa 245824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 1631 - 1561
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctgg 356  Q
    |||||||||  |||||| |||| |||||||||||||||||||||| ||||   ||||||||  ||||||||    
T  1631 tgaggacaaaacacgctaaaaagactcgtgttggtttgtggggtcagtcgataatcctgaaagcagtctgg 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 1969 - 1932
Alignment:
Q  298 acgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  1969 acgctgaaaagactcgtgttggtttgtggggtcagtcg 1932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 4776 - 4825
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  4776 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 4825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 5236 - 5285
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcg 335  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||| ||||    
T  5236 tgaggacaaaacacgctgaaaagactcgtgttggtttgtagggtcagtcg 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 105936 - 106005
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtccgtcggcgatcctgaattcagtctg 355  Q
    |||||||||  ||||||||||| |||||||||||||| | ||||| |||||| || |||||  |||||||    
T  105936 tgaggacaaaacacgctgaaaagactcgtgttggtttatagggtcagtcggcaattctgaaagcagtctg 106005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 14632 - 14588
Alignment:
Q  286 tgaggacaatgcacgctgaaaatactcgtgttggtttgtggggtc 330  Q
    |||||||||  || |||||||| ||||||||||||||||||||||    
T  14632 tgaggacaaaacatgctgaaaagactcgtgttggtttgtggggtc 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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