View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-9 (Length: 446)

Name: NF1509R-Insertion-9
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-9
NF1509R-Insertion-9
[»] chr5 (3 HSPs)
chr5 (283-444)||(38558947-38559110)
chr5 (287-327)||(6695792-6695832)
chr5 (283-327)||(6697372-6697416)
[»] chr8 (4 HSPs)
chr8 (283-446)||(40600540-40600704)
chr8 (283-324)||(14706279-14706320)
chr8 (296-345)||(16910287-16910336)
chr8 (289-345)||(27244277-27244333)
[»] chr3 (13 HSPs)
chr3 (283-420)||(53343106-53343244)
chr3 (38-234)||(24733881-24734080)
chr3 (283-419)||(52717623-52717760)
chr3 (12-95)||(24677081-24677164)
chr3 (283-419)||(32558219-32558357)
chr3 (10-95)||(24634451-24634536)
chr3 (346-416)||(7050462-7050533)
chr3 (283-327)||(45781551-45781595)
chr3 (283-326)||(7050983-7051026)
chr3 (18-95)||(24656563-24656640)
chr3 (18-82)||(24672936-24673000)
chr3 (283-327)||(25694865-25694909)
chr3 (283-327)||(52717123-52717167)
[»] chr1 (2 HSPs)
chr1 (283-419)||(8641811-8641948)
chr1 (283-377)||(45500661-45500758)
[»] chr4 (1 HSPs)
chr4 (284-373)||(21838206-21838295)
[»] chr7 (1 HSPs)
chr7 (283-375)||(22297851-22297943)
[»] chr6 (1 HSPs)
chr6 (288-338)||(14050191-14050241)
[»] chr2 (4 HSPs)
chr2 (283-327)||(1522396-1522440)
chr2 (289-377)||(10174650-10174738)
chr2 (283-327)||(1521650-1521694)
chr2 (289-377)||(6850289-6850377)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 283 - 444
Target Start/End: Original strand, 38558947 - 38559110
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 381  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38558947 gtggattctaggatgaaccattaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttagatgtgttagagacaaaa 38559046  T
Q  382 gtgagaacac-aagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttg 444  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38559047 gtgagaacacaaagtatatttttgcacactatccttgttgtcagcctcatctttctcacgtttg 38559110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 6695792 - 6695832
Alignment:
Q  287 attctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||| ||||||||||||||| ||||||| ||||||||    
T  6695792 attctagggtgaaccatcaaataagtggttcaccggtggac 6695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 6697416 - 6697372
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  6697416 gtggattctagggtgaaccatcaaataagtggttcaccggcggac 6697372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 283 - 446
Target Start/End: Complemental strand, 40600704 - 40600540
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 381  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| |||    
T  40600704 gtggattttaggatgaaccatcaaataagtggttcatcggtggaccatctttatacaccatcaaatttaaattaaaggtttagacgtgttagagacaaaa 40600605  T
Q  382 gtgagaacacaagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttgac 446  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40600604 gtgagaacacaaatatatttttgcacaatatccttgttatcagcctcatctttctcacgtttgac 40600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 14706279 - 14706320
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtg 324  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  14706279 gtggattctagggtgaaccatcaaacaaatagttcatcggtg 14706320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 16910287 - 16910336
Alignment:
Q  296 tgaaccatcaaataaatggttcatcggtggactacctttatacaccatca 345  Q
    ||||||||||| ||| |||||||||||||||| |||||| || |||||||    
T  16910287 tgaaccatcaactaagtggttcatcggtggaccacctttgtataccatca 16910336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 27244333 - 27244277
Alignment:
Q  289 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatca 345  Q
    |||||| ||||||||||| ||||| ||||| |||||||| || |||||| |||||||    
T  27244333 tctagggtgaaccatcaattaaatagttcaccggtggaccacttttatataccatca 27244277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 283 - 420
Target Start/End: Original strand, 53343106 - 53343244
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 381  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  53343106 gtggattctaggatgaaccatcaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttaaatgtgttagagacaaaa 53343205  T
Q  382 gtgagaacacaagtatatttttgcacactatccttgtta 420  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53343206 gtgagaacacaagtatatttttgcacactatccttgtta 53343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 234
Target Start/End: Original strand, 24733881 - 24734080
Alignment:
Q  38 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgnnnnnnnn 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24733881 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgaaaaaaaa 24733980  T
Q  138 nnt-aaaga-gttgtccataaatag-annnnnnnnnnctgatggaaaatatgtgacgtaggaagtgttgtgaaactttcgaacaaaactgtgatgcttta 234  Q
      | ||||| |||||||||||||||            ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  24733981 aataaaagaggttgtccataaatagttttttttttttctgatggaaaatatgtgacgtagaaagtgttgtccaactttcgaacaaaactgtgatgcttta 24734080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 283 - 419
Target Start/End: Complemental strand, 52717760 - 52717623
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 381  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  52717760 gtggattctagggtgaaccatcaactaaatggttcatggatggaccacttttgtacaccattcgatttaaattaaaggtttagatgtgttagacaaaaaa 52717661  T
Q  382 gtgagaacacaagtatatttttgcacactatccttgtt 419  Q
     |||||||||||||||| || |||||||||||||||||    
T  52717660 atgagaacacaagtatacttctgcacactatccttgtt 52717623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 24677081 - 24677164
Alignment:
Q  12 tttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 95  Q
    ||||| |||||| ||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  24677081 tttgaaccttgacacttaataccaatggaagccaactccaagctgatcagaatagtataagctttatgcatactcattttgtgt 24677164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 419
Target Start/End: Original strand, 32558219 - 32558357
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttag--agacaa 380  Q
    |||||||||||| ||||||||||| ||| ||||||| ||  |||  || ||| ||||||||  |||||||||||||||||||||| ||||||  | | ||    
T  32558219 gtggattctagggtgaaccatcaactaagtggttcaccgacggatcacttttgtacaccattcgatttaaattaaaggtttagatatgttagacaaaaaa 32558318  T
Q  381 agtgagaacacaagtatatttttgcacactatccttgtt 419  Q
    | |||||||| ||||||| || |||||||||||||||||    
T  32558319 aatgagaacataagtatacttctgcacactatccttgtt 32558357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 24634451 - 24634536
Alignment:
Q  10 tatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 95  Q
    ||||||| ||||||||| |||||||||| ||| |||| ||||  ||||||||||| ||||| |||||||| |||||||||||||||    
T  24634451 tatttgaaccttgatacataattccaattgaacccaactccaaactcatcagaatagtatatgctttatggatactcattttgtgt 24634536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 7050462 - 7050533
Alignment:
Q  346 gatttaaattaaaggtttagatgtgttaga-gacaaagtgagaacacaagtatatttttgcacactatcctt 416  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||||||||| || ||||||||||||||    
T  7050462 gatttaaattaaaggtttagatgtgttagacaaaaaaatgagaacacaagtatacttctgcacactatcctt 7050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 45781551 - 45781595
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggac 45781595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 7051026 - 7050983
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtgga 326  Q
    |||||||||||| ||||||||||||||| || ||||||||||||    
T  7051026 gtggattctagggtgaaccatcaaataagtgattcatcggtgga 7050983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 24656563 - 24656640
Alignment:
Q  18 ccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 95  Q
    ||||| ||||| | |||||| ||| |||| || | | |||| ||||| ||||| ||||||||||||||||||||||||    
T  24656563 ccttggtactttactccaattgaacccaactctaaggtcataagaatagtatatgctttatgcatactcattttgtgt 24656640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 24672936 - 24673000
Alignment:
Q  18 ccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcat 82  Q
    |||||||||||||||||||| ||||| || || | | |||| ||||| ||||| |||||||||||    
T  24672936 ccttgatacttaattccaattgaagctaactctaaggtcataagaatagtatatgctttatgcat 24673000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 25694909 - 25694865
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||    
T  25694909 gtggattctagagtgaaccatcatataagtggttcatcggtggac 25694865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 52717123 - 52717167
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||||||| ||||||||||||||| || |||| ||||||||    
T  52717123 gtggattctagggtgaaccatcaaataactgattcaccggtggac 52717167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 283 - 419
Target Start/End: Complemental strand, 8641948 - 8641811
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 381  Q
    |||||||||||| ||||||||||| ||| |||||   || ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  8641948 gtggattctagggtgaaccatcaactaagtggttttccgatggaccacttttgtacaccatttgatttaaattaaaggtttagatgtgttagacaaaaaa 8641849  T
Q  382 gtgagaacacaagtatatttttgcacactatccttgtt 419  Q
     |||||||||||||||| ||  | ||||||||||||||    
T  8641848 atgagaacacaagtatacttcaggacactatccttgtt 8641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 45500758 - 45500661
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtg---gactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 377  Q
    ||||||| |||| ||||||||||||||| |||||||  | ||   ||| || |||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  45500758 gtggattttaggttgaaccatcaaataagtggttcactgatgatggaccacttttatacatcatccgatttaaattaaaagtttaaatgtgttagaga 45500661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 21838295 - 21838206
Alignment:
Q  284 tggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgtta 373  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagtta 21838206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 375
Target Start/End: Complemental strand, 22297943 - 22297851
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgttaga 375  Q
    |||||||||||  ||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||||    
T  22297943 gtggattctagagtgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagttaga 22297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 14050191 - 14050241
Alignment:
Q  288 ttctaggatgaaccatcaaataaatggttcatcggtggactacctttatac 338  Q
    |||||||||||||||||||| || ||||||||||||| ||||| |||||||    
T  14050191 ttctaggatgaaccatcaaacaagtggttcatcggtgaactacttttatac 14050241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 1522440 - 1522396
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||    
T  1522440 gtggattctaggatgaaccatcaaacaagtggttcaccggtggac 1522396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 10174738 - 10174650
Alignment:
Q  289 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 377  Q
    |||||| ||||||||||| ||||||||||| |||||||| || |||||  ||| ||||||| |  | |||||||| |||| ||||||||    
T  10174738 tctagggtgaaccatcaactaaatggttcaccggtggaccacttttatttaccgtcagattaatttaaaaggtttggatgagttagaga 10174650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 1521650 - 1521694
Alignment:
Q  283 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 327  Q
    |||||||||||| |||||||||||| || ||||||| ||||||||    
T  1521650 gtggattctagggtgaaccatcaaacaagtggttcaccggtggac 1521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 6850289 - 6850377
Alignment:
Q  289 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 377  Q
    |||||| |||| ||| |||||| |||||||||||||||| || |||||  ||| ||||||| |  | |||||||| |||| ||||||||    
T  6850289 tctagggtgaagcataaaataagtggttcatcggtggaccacttttatttaccgtcagattaatttaaaaggtttggatgagttagaga 6850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University