View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509_high_17 (Length: 314)

Name: NF1509_high_17
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509_high_17
NF1509_high_17
[»] chr1 (2 HSPs)
chr1 (18-302)||(40383671-40383960)
chr1 (210-308)||(12673179-12673270)
[»] chr5 (1 HSPs)
chr5 (210-302)||(16081644-16081729)
[»] chr8 (1 HSPs)
chr8 (210-302)||(40536282-40536367)
[»] chr7 (1 HSPs)
chr7 (210-302)||(45752643-45752728)
[»] chr4 (1 HSPs)
chr4 (210-264)||(15828367-15828421)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 40383960 - 40383671
Alignment:
Q  18 gcattgactgtgaaaatgaaaatcattccaatgtcattgtagggatatataacagaaaagtagtaaaatttaatctcataaagtattactctgatgctnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |      
T  40383960 gcattgactgtgaaaatgaaaatcattccaatgtcattgtagggatatataacagaatagtagtaaaatttaatctcataaagtattactctgatggtaa 40383861  T
Q  118 nnnnn-ctatattaatatttgatacg----aatgcaagttttaactcccaataccttttttctctatttttggtgtgtgtgggtttcataatataacatt 212  Q
          ||| ||||| |||||||| |    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40383860 aaaaaactacattaacatttgatatgttggaatgtaagttttaactcgcaataccttttttctctatttttggtgtgtgtgggtttcataatagaacatt 40383761  T
Q  213 ttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt 302  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383760 ttagtttatttttgaattcttggaatctgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt 40383671  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 12673270 - 12673179
Alignment:
Q  210 attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatattcttcga 308  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| || |||       ||||||||| |||||| |||||||||||||| || |||||    
T  12673270 attttagcttatctttgaattcttggaatctgatagttttggagtatcctcc-------taatgagcttcaaagcctcatgtttgatgatctttttcga 12673179  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 16081644 - 16081729
Alignment:
Q  210 attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt 302  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||| |||       ||||||||| |||||| |||||||||||||||||    
T  16081644 attttagcttatctttgaattcatggaatttggtagttttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt 16081729  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 40536367 - 40536282
Alignment:
Q  210 attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt 302  Q
    ||||||| ||||||||||||||||||||| || ||| ||||||||||| |||       ||||||||| |||||| |||||||||||||||||    
T  40536367 attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt 40536282  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 45752728 - 45752643
Alignment:
Q  210 attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt 302  Q
    ||||||| ||||||||||||||||||||| || ||| ||||||||||| |||       ||||||||| |||||| |||||||||||||||||    
T  45752728 attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt 45752643  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 15828421 - 15828367
Alignment:
Q  210 attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaa 264  Q
    ||||||| ||||||||||||||||||||| |  ||||||||||||||| ||||||    
T  15828421 attttagcttatctttgaattcttggaatctagtagttttggagtctcctcctaa 15828367  T

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