View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509_high_20 (Length: 280)

Name: NF1509_high_20
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509_high_20
NF1509_high_20
[»] chr1 (3 HSPs)
chr1 (58-264)||(7583337-7583543)
chr1 (70-184)||(42747589-42747711)
chr1 (137-178)||(3121424-3121465)
[»] chr5 (1 HSPs)
chr5 (58-184)||(32882703-32882830)
[»] chr7 (3 HSPs)
chr7 (58-181)||(28175551-28175675)
chr7 (137-183)||(18654737-18654783)
chr7 (137-177)||(10097322-10097362)
[»] chr3 (8 HSPs)
chr3 (59-184)||(43822510-43822636)
chr3 (201-259)||(34778135-34778194)
chr3 (58-103)||(37334552-37334597)
chr3 (146-222)||(44560128-44560204)
chr3 (58-104)||(1384248-1384294)
chr3 (58-100)||(13799996-13800038)
chr3 (58-103)||(32582511-32582556)
chr3 (138-178)||(35682500-35682540)
[»] chr4 (6 HSPs)
chr4 (121-184)||(13615247-13615310)
chr4 (90-189)||(21501594-21501694)
chr4 (121-189)||(25885955-25886023)
chr4 (62-104)||(17425642-17425684)
chr4 (60-100)||(20435493-20435533)
chr4 (103-183)||(39276338-39276418)
[»] scaffold0040 (1 HSPs)
scaffold0040 (58-184)||(49874-49994)
[»] chr6 (1 HSPs)
chr6 (104-177)||(1288292-1288365)
[»] chr2 (1 HSPs)
chr2 (143-175)||(36625959-36625991)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 7583543 - 7583337
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583543 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagctacttgaacttacttatcaaataacacaataagctcataaaaataaact 7583444  T
Q  158 ataaactcgtgagaaaatgacagttacgaaatttgnnnnnnnnagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 257  Q
    |||| ||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583443 ataagctcgtgagaaaatgacagttacgaaatatgttttttttagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 7583344  T
Q  258 accaaac 264  Q
    |||||||    
T  7583343 accaaac 7583337  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 42747711 - 42747589
Alignment:
Q  70 taaaattgagataaaaagtgaaaagttataagctt--------aagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataa 161  Q
    ||||||||||||||||||||| ||| |||||||||        ||| |||||||| |  ||||| ||| ||||| |||||||||||||| ||| ||||||    
T  42747711 taaaattgagataaaaagtgataagctataagctttaagttataagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataa 42747612  T
Q  162 actcgtgagaaaatgacagttac 184  Q
     || ||||| |||||||||||||    
T  42747611 gcttgtgagtaaatgacagttac 42747589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 3121465 - 3121424
Alignment:
Q  137 ataagctcataaaaataaactataaactcgtgagaaaatgac 178  Q
    ||||||| ||||||||||||||||||||| | ||||||||||    
T  3121465 ataagctaataaaaataaactataaactcataagaaaatgac 3121424  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 32882830 - 32882703
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagctt-aagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 156  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||| ||| |||||||| |   |||||||| ||||  ||||||||| |||||||| |    
T  32882830 agattgcaggggtaaaattgagataaaaagtgagaagctgtaagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagc 32882731  T
Q  157 tataaactcgtgagaaaatgacagttac 184  Q
    ||||| ||||||||||||||||| ||||    
T  32882730 tataagctcgtgagaaaatgacaattac 32882703  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 28175551 - 28175675
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 156  Q
    |||||| |||| ||||||| ||||||||||| |||||| ||||||| |||| |||||||  |  ||||||||| ||  | |||||||||||||||||| |    
T  28175551 agattgtaggggtaaaattcagataaaaagtaaaaagtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagc 28175650  T
Q  157 tataaactcgtgagaaaatgacagt 181  Q
    ||||||||| | |||||||||||||    
T  28175651 tataaactcattagaaaatgacagt 28175675  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 18654737 - 18654783
Alignment:
Q  137 ataagctcataaaaataaactataaactcgtgagaaaatgacagtta 183  Q
    |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  18654737 ataagctcataaaaataatctataaactcatgagaaaatgaccgtta 18654783  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 10097322 - 10097362
Alignment:
Q  137 ataagctcataaaaataaactataaactcgtgagaaaatga 177  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  10097322 ataagcttataaaaataaacaataaactcatgagaaaatga 10097362  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 43822636 - 43822510
Alignment:
Q  59 gattgcagggataaaattgagataaaaagtgaaaagttataagc-ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 157  Q
    |||||||||| |||||| |||||||||||||| ||| ||||||| ||||| |||||||| |  ||||||||| | ||| |||| ||||| ||||||| ||    
T  43822636 gattgcaggggtaaaatggagataaaaagtgacaagctataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagct 43822537  T
Q  158 ataaactcgtgagaaaatgacagttac 184  Q
    |||| || |||  ||||||||| ||||    
T  43822536 ataagcttgtgtaaaaatgacaattac 43822510  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 34778194 - 34778135
Alignment:
Q  201 agtcatatgaacttataagtta-ataaaatataaaccacaagctcaaatatgtgtcttac 259  Q
    |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||    
T  34778194 agtcatatgaacttataagttatataaattataatccataaactcaaatatgtgtcttac 34778135  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 37334597 - 37334552
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagct 103  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||    
T  37334597 agattgcacggataaaattgagataaaaagcgaaaagctataagct 37334552  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 44560204 - 44560128
Alignment:
Q  146 taaaaataaactataaactcgtgagaaaatgacagttacgaaatttgnnnnnnnnagtcatatgaacttataagtta 222  Q
    |||||||||| |||||||||||||||||||||| ||||| |||  ||        ||||||||||||||||||||||    
T  44560204 taaaaataaattataaactcgtgagaaaatgacggttaccaaacatgtcttttttagtcatatgaacttataagtta 44560128  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 1384294 - 1384248
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagctt 104  Q
    ||||||||| | ||||| ||||||||||||||| |||||||||||||    
T  1384294 agattgcagcggtaaaaatgagataaaaagtgataagttataagctt 1384248  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 13799996 - 13800038
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataa 100  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||    
T  13799996 agattgcaggggtaaaattgagataaaaagtgataagctataa 13800038  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 32582556 - 32582511
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagct 103  Q
    |||||||| || ||||||||||||||||||||| ||| ||||||||    
T  32582556 agattgcaagggtaaaattgagataaaaagtgataagctataagct 32582511  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 35682540 - 35682500
Alignment:
Q  138 taagctcataaaaataaactataaactcgtgagaaaatgac 178  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  35682540 taagctaataaaaataaactataagcttgtgagaaaatgac 35682500  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 13615247 - 13615310
Alignment:
Q  121 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 184  Q
    |||||| || ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||    
T  13615247 cttatcgaaaaacacaataatatcataaaaataaggtataaactcgtgagaaaatgacagttac 13615310  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 21501694 - 21501594
Alignment:
Q  90 aaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaa 188  Q
    |||| ||||||||| |||| |||||||| |  ||||||||| ||||| ||| |||  ||||||||| |||||| ||||||||||| |||||||||| |||    
T  21501694 aaaaattataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtgacagttaccaaa 21501595  T
Q  189 t 189  Q
    |    
T  21501594 t 21501594  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 25886023 - 25885955
Alignment:
Q  121 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaat 189  Q
    ||||||||| ||||| ||||||| ||||||| || |||||| |||||| ||||||||||||||| ||||    
T  25886023 cttatcaaaaaacacgataagctaataaaaacaagctataagctcgtgtgaaaatgacagttacaaaat 25885955  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 17425642 - 17425684
Alignment:
Q  62 tgcagggataaaattgagataaaaagtgaaaagttataagctt 104  Q
    ||||||| ||||||||||||||||||||| | |||||||||||    
T  17425642 tgcaggggtaaaattgagataaaaagtgataggttataagctt 17425684  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 20435533 - 20435493
Alignment:
Q  60 attgcagggataaaattgagataaaaagtgaaaagttataa 100  Q
    |||| |||| ||||||||||||||||||||| |||||||||    
T  20435533 attgtaggggtaaaattgagataaaaagtgacaagttataa 20435493  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 39276418 - 39276338
Alignment:
Q  103 ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagtta 183  Q
    ||||| |||||||| |  ||||||||| |||   |||||||  |||||||||  ||||| |||||||||||||||||||||    
T  39276418 ttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtta 39276338  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 49874 - 49994
Alignment:
Q  58 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 157  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||      |||||||| |  ||||||| | | | | |||||||| ||||||||| ||    
T  49874 agattgcaagggtaaaattgagataaaaagtgataagctataagc------tacttgaattagcttatcacaaaccgctataagctcttaaaaataagct 49967  T
Q  158 ataaactcgtgagaaaatgacagttac 184  Q
    |||| ||||||||||| |||| |||||    
T  49968 ataagctcgtgagaaagtgaccgttac 49994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 1288365 - 1288292
Alignment:
Q  104 taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatga 177  Q
    ||||||||||||| | |||||||||| ||||  |||||||||| | ||||| |||| ||||||||  |||||||    
T  1288365 taagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatgaactcgtgtaaaaatga 1288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 36625959 - 36625991
Alignment:
Q  143 tcataaaaataaactataaactcgtgagaaaat 175  Q
    |||||||||||||||||| ||||||||||||||    
T  36625959 tcataaaaataaactatatactcgtgagaaaat 36625991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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