View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_27 (Length: 245)
Name: NF1509_high_27
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 25899646 - 25899440
Alignment:
| Q |
20 |
gaacgccttatgtttaattcaatgaaaaactgatggaactcacacaaaatgaagtaatggaacagtaaaagtatatgtatgaagtgaatggagagtattt |
119 |
Q |
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| T |
25899646 |
gaacgccttatgtttaattcaatgaaaaactgatgga-ctcacacaaaatgaagtaatggaacagtaaaagtatatgtatgaagtgaatggagagtattt |
25899548 |
T |
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| Q |
120 |
aattaatggaaaagagattcagttacaaacatgaaccagagccaatgctcctcccagagaatgatttctcctattacaaatatatcaagactcatcctat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
25899547 |
aattaatggaaaagagattcagttacaaacatgaaccagagccaatgctcctcccagagaatgatttctcctattacaaatatatcaacactcatcctgt |
25899448 |
T |
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| Q |
220 |
ctaatcac |
227 |
Q |
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|||||||| |
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| T |
25899447 |
ctaatcac |
25899440 |
T |
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