View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_28 (Length: 242)
Name: NF1509_high_28
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37153980 - 37153754
Alignment:
| Q |
1 |
attctcagaattgtttagtgttctcaggctcctaatctgcataagttccaagtatataaaagcataaaaatcaacatgactaaaattgcaaactattaga |
100 |
Q |
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| T |
37153980 |
attctcagaattgtttagtgttctcaggctcctaatctgcataagttccaagtatataaaagcataaaaatcaacatgactaaaattgcaaactattaga |
37153881 |
T |
|
| Q |
101 |
ttagtaaaggtcatggaagaagaagaaaaaactaatgtaacaaactaatttataggttttaattggatatagctatataatgttgtaagagaaacccagt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37153880 |
ttagtaaaggtcatggaagaagaagaaaaaac-------------taatttataggttttaattggatatagctatataatgttgtaagagaaacccagt |
37153794 |
T |
|
| Q |
201 |
tgcgtaaactaaagaagtgaaagaatgttacctatctgtg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37153793 |
tgcgtaaactaaagaagtgaaagaatgttacctatctgtg |
37153754 |
T |
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