View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_35 (Length: 232)
Name: NF1509_high_35
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 21200140 - 21199945
Alignment:
| Q |
1 |
tagataatacagttcagaagcaagttgaataagaaagtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttct |
100 |
Q |
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| T |
21200140 |
tagataatatagttccgaagagagttgcataagaaagcatgcctctttcttgctgatatcaacagtttgttccgtgat-gtgccaatatcagagatttcc |
21200042 |
T |
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| Q |
101 |
aggttttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaacccgc |
197 |
Q |
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| T |
21200041 |
agcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaaccgc |
21199945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 21194866 - 21194692
Alignment:
| Q |
23 |
agttgaataagaaagtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataa |
122 |
Q |
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| T |
21194866 |
agttgcataagaaagcatgcctctttcttgctgatatcaacagtttgttctgtaatagcgtcaatatcagatatttctagcttttgaagtagttgtataa |
21194767 |
T |
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| Q |
123 |
ctgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaacccgc |
197 |
Q |
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| T |
21194766 |
ctgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttccttaacaagcccgc |
21194692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 24284617 - 24284461
Alignment:
| Q |
36 |
agtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataactgttccaaaaac |
135 |
Q |
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| T |
24284617 |
agtatgcctcttgcttgctgatttcaacagattcttcaacaatagcaccaatgtttgtgatttcaagcttttgaagtagtggtataactgttccaaaaac |
24284518 |
T |
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| Q |
136 |
attaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
192 |
Q |
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| T |
24284517 |
attaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaa |
24284461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 24232121 - 24232279
Alignment:
| Q |
34 |
aaagtatgcctctttcttgctgatatcaacagtttgttccgtaatagcgccaatatcagagatttctaggttttgaagtagttgtataactgttccaaaa |
133 |
Q |
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| T |
24232121 |
aaagcatgcctctttcttgttgatgtcaacagcttgttcctcaatagcatcaatagtctcgactccaagcttttgaagtagatttaaacttgctccaaaa |
24232220 |
T |
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| Q |
134 |
acattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
192 |
Q |
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| T |
24232221 |
acattaggcataacacaaagatcatcagaaatgataaaagtagcattttccttcacaaa |
24232279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 24153975 - 24154031
Alignment:
| Q |
136 |
attaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
192 |
Q |
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| T |
24153975 |
attaggcatcacataaagatcgtcccgaataataaaagaagcagtttccttaacaaa |
24154031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 3151577 - 3151496
Alignment:
| Q |
111 |
gtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgcagcagtttccttaacaaa |
192 |
Q |
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| T |
3151577 |
gtagatgtacaactgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaa |
3151496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 10989258 - 10989190
Alignment:
| Q |
106 |
ttgaagtagttgtataactgttccaaaaacattaggcattacataaagatcatctgaaataataaatgc |
174 |
Q |
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| T |
10989258 |
ttgaagtagatgtataattgttccgaaaacattaggcataatagaaagctcatcagaaatgatcaatgc |
10989190 |
T |
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