View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_36 (Length: 231)
Name: NF1509_high_36
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38400467 - 38400248
Alignment:
| Q |
1 |
atggtacgtagacactgatatagctagttaagtcaattacattacatgatagtattacaaattatttcccttttcctttgagataaaattgaaagttgga |
100 |
Q |
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| T |
38400467 |
atggtacgtagacattgatatagctagttaagtcaattacattacatgatagtattacaaattatttcccttttgctttgagataaaattgaaagttgga |
38400368 |
T |
|
| Q |
101 |
atagtgagattgatctttatgcatgcatgcttcacactctctctttatatagctttaattatcatcatca------tcatggtaaccatccacccatgta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38400367 |
atagtgagattgatctttatgcatgcatgcttcacactctctctttatatagctttaattatcatcatcatcatcatcatggtaaccatccacccatgta |
38400268 |
T |
|
| Q |
195 |
gttattcatgcttggccctg |
214 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38400267 |
gttattcatgcttggccctg |
38400248 |
T |
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