View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_4 (Length: 510)
Name: NF1509_high_4
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 173 - 493
Target Start/End: Complemental strand, 29280376 - 29280067
Alignment:
| Q |
173 |
ggttgttcctatactcaatcaaaaagaataaaagtaaccaaattagtaccatggtccaagaacttatgttgactcactaatggccattttacaactgtcg |
272 |
Q |
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| T |
29280376 |
ggttgttcctatactcaatcaaaaagaataaaagtaaacaaattagtaccatggtccaagaacttatgttgactcactaatgaccattttacaactgtcg |
29280277 |
T |
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| Q |
273 |
tcaaagaattttgaaccattgtttaaattgttagcaatcgcaattgcagtcgcaatataaaaagttttgaggtct--gcaacggtatcacaaccattaga |
370 |
Q |
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| T |
29280276 |
ttaaagaattttgaaccattgtttaaattgttggcaatcgcaat------------ataaaaggttttgaggtctctgcaatggtatcacaaccattaga |
29280189 |
T |
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| Q |
371 |
ccacatcagctgccttttttatggtacaaaggtttgcagcgtaaccacaatttaaaatcatgatttaaactgtgttccaaataattatatgattaaaatt |
470 |
Q |
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| T |
29280188 |
ccacatcagctgc-ttttttatggtacaaaggtttgcagcctaaccacaatttaaaatcatgatttaaactttgttccaaataattataagattaaaatt |
29280090 |
T |
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| Q |
471 |
ttatcattgagctgacacctcgt |
493 |
Q |
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|||||| |||||||||||||||| |
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| T |
29280089 |
ttatcactgagctgacacctcgt |
29280067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 29280534 - 29280492
Alignment:
| Q |
15 |
aatgcaaatccacaaaaagcacacatggttctggtggtttagg |
57 |
Q |
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| T |
29280534 |
aatgcaaatccacaaaaagtacacatggttctggtggtttagg |
29280492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 42945084 - 42945056
Alignment:
| Q |
402 |
gtttgcagcgtaaccacaatttaaaatca |
430 |
Q |
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| T |
42945084 |
gtttgcagcgtaaccacaatttaaaatca |
42945056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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