View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_high_9 (Length: 358)
Name: NF1509_high_9
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 35334905 - 35335241
Alignment:
| Q |
15 |
agaaggaacgaaggatcggaaagtgaatcagtggacgaagaaagggaacatgaaagaaattggatcggnnnnnnnnnnnnnnnnnnnnnnnnnaattctc |
114 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
35334905 |
agaaagaacgaaggatcgggaagtgaatcagtggacgaagaaagggaacatgaaaggaattggatcgggagagaagaagagaagagaagagaaaattctc |
35335004 |
T |
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| Q |
115 |
agaccctaattgagagagaaaattctcgagtgtttcttcttctctacgattttgtaagaggtctatagaggtgaagtttctgttaagatcggtaatgaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35335005 |
agaccctaattgagagagaaaattctcgagtgtttcttcttctctacgattttgtaagaggtctatagaggtgaagtttctgttaagatcggtaatgaca |
35335104 |
T |
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| Q |
215 |
agaaaacgcgaactcgagaaggagaagtgtttttatagggagatgagaatcttggttcggaagagatctgggccatcgatgtaggaaagataaagacgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35335105 |
agaaaacgcgaactcgagaaggagaagtgtttttatagggagatgagaatcttggttcggaagagatctgggccgtcgatgtaggaaagataaagacgca |
35335204 |
T |
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| Q |
315 |
aatcacgttatcgttcggtaaagtgaggtttcatttc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35335205 |
aatcacgttatcgttcggtaaagtgaggtttcatttc |
35335241 |
T |
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