View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_1 (Length: 840)
Name: NF1509_low_1
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 20 - 834
Target Start/End: Complemental strand, 36658484 - 36657663
Alignment:
| Q |
20 |
gatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctttc-atttttagtatcatttatcacacgttcaatacaatgact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |
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| T |
36658484 |
gatttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctttttatttttagtatcatttatcacacattgaatacaatgact |
36658385 |
T |
|
| Q |
119 |
agcaaattcttaggttcggcagtgatattggttcnnnnnnnatacatatcattgacggtggtagcacttgaagatccaaatatagatgcatatgatgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36658384 |
agcaaattcttaggttcggcagtgatattggttctttttttatacatatcattgacggtggtagcacttgaagatccaaatatagatgcatatgatgatg |
36658285 |
T |
|
| Q |
219 |
acattaaagatggcaagatgtcgttacccgaatgtaagcaa----caatgcatgtccatatgcttgaaaatcaaatttgcagaagattcactttgccaag |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36658284 |
acattaaagatggcaagatgtcgttacccgaatgtaagcaagcaacaatgcatgtccatatgcttgaaaatcaaatttgcagaagattcactttgccaag |
36658185 |
T |
|
| Q |
315 |
atgcatgctctccagcatgtaaacaattacaaggcaaaggttcnnnnnnnnatagacctaaaatgtagtgacgatatatacctctaaatagcatatgtat |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36658184 |
atgcatgctctccagcatgtaaacaattacaaggcaaaggttctttattttatagacctaaaatgtagtgacgatatatacctctaaatagcatatgtat |
36658085 |
T |
|
| Q |
415 |
attattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgtattcnnnnnnnnnnc--atccgcaatactgtgatttctcaaca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
36658084 |
attattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgtatttttttttttttctcatccgcaatactgtgatttctcaaca |
36657985 |
T |
|
| Q |
513 |
ccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgataccatttgtctggaataatcaaactca |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36657984 |
ccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgataccatttgtctgggataatcaaactca |
36657885 |
T |
|
| Q |
613 |
accacagagaagtttaatgttaacaattccatttttaaaacatgaaacttgtcaaaacaatgtcatcatttcattcgacattgtctcatcctagatataa |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36657884 |
accacagagaagtttaatgttaacaattccatttttaaaacatgaaacttgtcaaaacaatgtcatcatttcattcgacattgtctcatcctagatataa |
36657785 |
T |
|
| Q |
713 |
aaatttgtctactcatttcttactaatgaatctatcattagagggtagtacaaccaactataagagacttaaagtttcgaccatataaagtgcttcacaa |
812 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36657784 |
aaatttgtccactcatttcttactaatgaatctatcattagagggtagtacaaccaactataagagacttaaagtttcgaccatataaagtgcttcacaa |
36657685 |
T |
|
| Q |
813 |
acattttcttgagaataatcta |
834 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36657684 |
acattttcttgagaataatcta |
36657663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 251 - 356
Target Start/End: Complemental strand, 13032395 - 13032290
Alignment:
| Q |
251 |
tgtaagcaacaatgcatgtccatatgcttgaaaatcaaatttgcagaagattcactttgccaagatgcatgctctccagcatgtaaacaattacaaggca |
350 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||| || ||||||||||||||||||||||| |||||| |
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| T |
13032395 |
tgtaaacaacaatgcatgtctatatgcttgaaaatcaaacttgcacaagtttcactttgtcaagaagcttgctctccagcatgtaaacaattgaaaggca |
13032296 |
T |
|
| Q |
351 |
aaggtt |
356 |
Q |
| |
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|||||| |
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|
| T |
13032295 |
aaggtt |
13032290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 13032627 - 13032555
Alignment:
| Q |
21 |
atttttcgccacacatattccgagcaaatttccatattacatgtatttcaagacctt-tcatttttagtatca |
92 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
13032627 |
atttttcaccacacatattccaagcaaatttccatattacatgcatttcaagaccttctcatttttagtatca |
13032555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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