View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509_low_11 (Length: 358)
Name: NF1509_low_11
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 35334905 - 35335241
Alignment:
| Q |
15 |
agaaggaacgaaggatcggaaagtgaatcagtggacgaagaaagggaacatgaaagaaattggatcggnnnnnnnnnnnnnnnnnnnnnnnnnaattctc |
114 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
35334905 |
agaaagaacgaaggatcgggaagtgaatcagtggacgaagaaagggaacatgaaaggaattggatcgggagagaagaagagaagagaagagaaaattctc |
35335004 |
T |
|
| Q |
115 |
agaccctaattgagagagaaaattctcgagtgtttcttcttctctacgattttgtaagaggtctatagaggtgaagtttctgttaagatcggtaatgaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35335005 |
agaccctaattgagagagaaaattctcgagtgtttcttcttctctacgattttgtaagaggtctatagaggtgaagtttctgttaagatcggtaatgaca |
35335104 |
T |
|
| Q |
215 |
agaaaacgcgaactcgagaaggagaagtgtttttatagggagatgagaatcttggttcggaagagatctgggccatcgatgtaggaaagataaagacgca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35335105 |
agaaaacgcgaactcgagaaggagaagtgtttttatagggagatgagaatcttggttcggaagagatctgggccgtcgatgtaggaaagataaagacgca |
35335204 |
T |
|
| Q |
315 |
aatcacgttatcgttcggtaaagtgaggtttcatttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35335205 |
aatcacgttatcgttcggtaaagtgaggtttcatttc |
35335241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University