View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509_low_15 (Length: 330)
Name: NF1509_low_15
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_15 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 17605418 - 17605718
Alignment:
| Q |
18 |
agtattaaacaatataaatggcactaatcaaattgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgaca |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
17605418 |
agtattaaacaatataaatggcactaatcaaattgtgaatggtttccattcttcacaaacaaatgtcattaatgaacttgtgaatggtttcccttcgaca |
17605517 |
T |
|
| Q |
118 |
caaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17605518 |
caaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttttatatgaacgaccgtaaccaacctgtgattggtttttcttcctcac |
17605617 |
T |
|
| Q |
218 |
aaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcctttgct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17605618 |
aaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgaatttcatatccccccaatcaccttataagcctttgct |
17605717 |
T |
|
| Q |
318 |
a |
318 |
Q |
| |
|
| |
|
|
| T |
17605718 |
a |
17605718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 307
Target Start/End: Original strand, 17632088 - 17632296
Alignment:
| Q |
99 |
gaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtg |
198 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||| |||||| || |||||||||| ||||| || |||| |
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|
| T |
17632088 |
gaatggtttcccttcaacacaaataaatatgtctaatccttcagtgtctctgaatgctaccaatccaactctctctatgaacgacaataaccaacttgtg |
17632187 |
T |
|
| Q |
199 |
attggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaat |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||| | | |||||||| |||| |||||||||| | |
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|
| T |
17632188 |
attgatttttcttcctcacaaacaaatgaccccctatcaccaacttttgaatttatattgccttcaccagaaaataacatgaatttcctatccccccagt |
17632287 |
T |
|
| Q |
299 |
caccttata |
307 |
Q |
| |
|
||||||||| |
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|
| T |
17632288 |
caccttata |
17632296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 16480579 - 16480383
Alignment:
| Q |
116 |
cacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctc |
215 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||||| |||||||| | ||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
16480579 |
cacaaacaaatgtgtctaattcttcggtgactctgaatgctaccaatccaactttgcctatgaacgatagtaaccaacctgtgattggtttttcttcctc |
16480480 |
T |
|
| Q |
216 |
acaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcct |
312 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||||||||||||| |||||||| | ||||||| |||| |||||||||| |||||||||| |||| |
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|
| T |
16480479 |
acaaacaaatgaccccccatcaccaaattttgaatttatgttgccttcaccgaaaaacaacatgaatttcctatccccccagtcaccttataggcct |
16480383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 16480694 - 16480568
Alignment:
| Q |
100 |
aatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtga |
199 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| | |||||||| | |||||| |||||||| |
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|
| T |
16480694 |
aatggttttccttcaacacaaacaaatgtgtctaattcttcagtgactctgaatgctaccaatccaactttgcctatgaacggcagtaaccaacctgtga |
16480595 |
T |
|
| Q |
200 |
ttggtttttcttcctcacaaacaaatg |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16480594 |
ttggtttttcttcctcacaaacaaatg |
16480568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 303
Target Start/End: Original strand, 17645582 - 17645832
Alignment:
| Q |
50 |
ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct |
149 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| | ||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||| | ||| |
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|
| T |
17645582 |
ttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgaatggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttct |
17645681 |
T |
|
| Q |
150 |
gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa |
249 |
Q |
| |
|
||||||||| | ||||||| | |||||| | |||| | ||||| ||| | ||||||||||||||| || || ||||||| ||||||| || |
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|
| T |
17645682 |
gaatgctacgagttcaactttgcctatgaatataagcaaccagcttgtgaatggatattcttcctcacaaac---ggaacctctatcacaaacttctgaa |
17645778 |
T |
|
| Q |
250 |
tttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcacct |
303 |
Q |
| |
|
||||||||| | ||||| || |||||||||| | |||||||| ||||||||| |
|
|
| T |
17645779 |
tttatgttgacttcaccaaaaagtaacatgaatcatatatcccctcaatcacct |
17645832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 17650022 - 17650252
Alignment:
| Q |
50 |
ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct |
149 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| || ||| || ||| ||||||||||||||| |||||| ||| ||||||||||||||| | |||| |
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|
| T |
17650022 |
ttgtgaatggtttccatgcctcacaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacaagaaaacgtgtctaatccttcaatgtctcc |
17650121 |
T |
|
| Q |
150 |
gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa |
249 |
Q |
| |
|
|| ||||||||| | | ||||| | ||||| || |||||| || ||||| ||| || ||||||||||||||||| ||| ||||||||||||| || |
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|
| T |
17650122 |
gattgctaccaattcgaatttccttgtgaacaacagtaaccaacttgtgaatgggttcctttcctcacaaacaaatggccctagatcaccaacttctgaa |
17650221 |
T |
|
| Q |
250 |
tttatgttgccatcaccgaagagtaacatga |
280 |
Q |
| |
|
||| | ||| | |||||||| |||||||||| |
|
|
| T |
17650222 |
tttttattgtcttcaccgaatagtaacatga |
17650252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 268
Target Start/End: Complemental strand, 17664037 - 17663819
Alignment:
| Q |
50 |
ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct |
149 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| || ||| |||||| |||||||||||||| |||||| ||| ||||||||||||| | | ||| | |
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|
| T |
17664037 |
ttgtgaatggtttccatacctcacaaacaaatgacaataaccaacttgtgaatggtttccctttaacacaagaaaacgtgtctaatcctttaatgtctat |
17663938 |
T |
|
| Q |
150 |
gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa |
249 |
Q |
| |
|
| ||||||||| || | |||| | ||||| | ||||| || ||| | |||||| ||||| |||||||||||| ||| | ||||||||||||| || |
|
|
| T |
17663937 |
ggttgctaccaatccgaagttccttgtgaacaatagtaacaaacttgtcaatggtttcccttccacacaaacaaatggccctcgatcaccaacttctgaa |
17663838 |
T |
|
| Q |
250 |
tttatgttgccatcaccga |
268 |
Q |
| |
|
||| ||||| | ||||||| |
|
|
| T |
17663837 |
tttttgttgtcttcaccga |
17663819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 17676328 - 17676098
Alignment:
| Q |
50 |
ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct |
149 |
Q |
| |
|
|||||||| |||||||| | || |||||||||| || ||| || ||| ||||||||||||||| ||||| ||||||| |||||||||| | ||||| |
|
|
| T |
17676328 |
ttgtgaatagtttccatgcctcccaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacatgaaaatgtgcctaatccttctatgtctct |
17676229 |
T |
|
| Q |
150 |
gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa |
249 |
Q |
| |
|
| ||||||||| | | ||||| | ||||| | |||||| || ||||| |||||| |||||||||||| |||| ||| | ||| ||||||||| || |
|
|
| T |
17676228 |
tattgctaccaattcgaatttccttgtgaacaatagtaaccaacttgtgaatggtttcctttcctcacaaaccaatggccctcgatctccaacttctgaa |
17676129 |
T |
|
| Q |
250 |
tttatgttgccatcaccgaagagtaacatga |
280 |
Q |
| |
|
||| | ||| | |||||||| |||||||||| |
|
|
| T |
17676128 |
tttttattgtcttcaccgaatagtaacatga |
17676098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 18766732 - 18766924
Alignment:
| Q |
115 |
acacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcct |
214 |
Q |
| |
|
||||||| | |||||||||||| |||||| || | ||| ||||||| |||| ||||| |||||||||| ||||| || | ||| |||||| |||||| |
|
|
| T |
18766732 |
acacaaaaagatgtgtctaatctttcagttccttttaatcctaccaatccaattttccctatgaacgacaataaccaacttttgaatggtttcccttcct |
18766831 |
T |
|
| Q |
215 |
cacaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttata |
307 |
Q |
| |
|
|||||| ||||| ||| | |||| ||||||| | ||| ||||||||||| | |||||||||| ||| |||||||| || |||||||||| |
|
|
| T |
18766832 |
cacaaaaaaatggccctcgatcattaacttctgagtttttgttgccatcattagaaagtaacatgaattttatatcccctcagtcaccttata |
18766924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 16481249 - 16481154
Alignment:
| Q |
46 |
caaattgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttca |
141 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| | ||| ||||| ||||||||| ||||| | |||||||||| || ||||||||||| |
|
|
| T |
16481249 |
caaattgtgaattgtttccattcctcacaaacaaatgctaataaccaacttctgaatggttttccttcaatacaaacaaatatggctaatccttca |
16481154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 17645036 - 17645156
Alignment:
| Q |
50 |
ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct |
149 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| || ||| |||||| ||| || |||||||| ||||||||||||||||| |||| |||| ||| | |
|
|
| T |
17645036 |
ttgtgaatggtattcattcctcacaaacaaattacagtaaccaacttgtgaaaggcttcccttcaacacaaacaaatgtgtccaatctttcaacgtcttt |
17645135 |
T |
|
| Q |
150 |
gaatgctaccaacccaacttt |
170 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
17645136 |
tcatgctaccaatccaacttt |
17645156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 16475589 - 16475525
Alignment:
| Q |
248 |
aatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcct |
312 |
Q |
| |
|
||||||||||||| |||||||| | ||||||| |||| |||||||||| |||||||||| |||| |
|
|
| T |
16475589 |
aatttatgttgccttcaccgaaaaacaacatgaatttcctatccccccagtcaccttataggcct |
16475525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 32670080 - 32670130
Alignment:
| Q |
116 |
cacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaa |
166 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32670080 |
cacaaacatatctgtctaatccttcagtgtctctgaatgctaccaacccaa |
32670130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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