View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509_low_19 (Length: 314)

Name: NF1509_low_19
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509_low_19
NF1509_low_19
[»] chr4 (4 HSPs)
chr4 (14-203)||(9769596-9769787)
chr4 (214-266)||(22296753-22296805)
chr4 (219-265)||(13208525-13208571)
chr4 (218-262)||(12215520-12215564)
[»] chr6 (1 HSPs)
chr6 (216-265)||(13248446-13248495)
[»] chr5 (1 HSPs)
chr5 (218-260)||(40028759-40028800)
[»] chr1 (1 HSPs)
chr1 (218-268)||(15182773-15182823)
[»] chr3 (1 HSPs)
chr3 (218-270)||(32198699-32198751)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 9769787 - 9769596
Alignment:
Q  14 agataacaagctataagaaaacaaatagaacaaaatcaatagacagaattatttcctaacaggctcttacaagtttacgagtctagaagac--aacattt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  9769787 agataacaagctataagaaaacaaagagaacaaaatcaatagatagaattatttcctaacaggctcttacaagtttacgagtctagaagacaaaacattt 9769688  T
Q  112 tttagtaactgcaatgagttatgaaaagttgaagccgaaaacatttgttgatgcatgtcatttgattgttggtcatcttacgttattttcaa 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  9769687 tttagtaactgcaatgagttatgaaaagttgaagcagaaaacatttattgatgcatgttatttgattgttagtcatcttacgttattttcaa 9769596  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 22296753 - 22296805
Alignment:
Q  214 ccagtcattttagtaatgatttgaatcaataaaaaggagttttagagaagttg 266  Q
    ||||||||||||||| ||| |||| | |||||| |||||||||||||||||||    
T  22296753 ccagtcattttagtagtgacttgagttaataaagaggagttttagagaagttg 22296805  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 13208525 - 13208571
Alignment:
Q  219 cattttagtaatgatttgaatcaataaaaaggagttttagagaagtt 265  Q
    |||||||||| |||||||| |||||||| |||| |||||||||||||    
T  13208525 cattttagtagtgatttgagtcaataaagaggaattttagagaagtt 13208571  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 12215520 - 12215564
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaa 262  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||    
T  12215520 tcattttagtatagatttgagtcaataaagaggagttttagagaa 12215564  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 13248446 - 13248495
Alignment:
Q  216 agtcattttagtaatgatttgaatcaataaaaaggagttttagagaagtt 265  Q
    |||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  13248446 agtcattttattattgatttgaaccaataaataggagttttagagaagtt 13248495  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 40028800 - 40028759
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagag 260  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  40028800 tcattttagtaatgatttgaatcaat-aaaatgagttttagag 40028759  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 15182773 - 15182823
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaagttgtt 268  Q
    ||||||||  ||| |||||| |||||||| |||||||||||||||||||||    
T  15182773 tcattttatcaatcatttgagtcaataaataggagttttagagaagttgtt 15182823  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 32198751 - 32198699
Alignment:
Q  218 tcattttagtaatgatttgaatcaataaaaaggagttttagagaagttgttca 270  Q
    ||||||||||  |||||| | |||||| ||| |||||||||||||||||||||    
T  32198751 tcattttagtggtgatttaagtcaatacaaaagagttttagagaagttgttca 32198699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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