View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509_low_2 (Length: 711)

Name: NF1509_low_2
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509_low_2
NF1509_low_2
[»] chr4 (26 HSPs)
chr4 (1-699)||(2390893-2391591)
chr4 (20-513)||(2381284-2381777)
chr4 (33-512)||(2380042-2380512)
chr4 (189-699)||(2382562-2383069)
chr4 (546-699)||(2380558-2380713)
chr4 (588-700)||(2381814-2381928)
chr4 (364-496)||(2533992-2534124)
chr4 (115-172)||(2367678-2367735)
chr4 (363-426)||(2621399-2621462)
chr4 (373-496)||(2547223-2547346)
chr4 (305-426)||(2525504-2525625)
chr4 (387-496)||(2367923-2368032)
chr4 (41-169)||(2376161-2376289)
chr4 (386-426)||(12124594-12124634)
chr4 (381-426)||(2361217-2361262)
chr4 (297-426)||(2467294-2467423)
chr4 (381-418)||(2486064-2486101)
chr4 (301-333)||(2376407-2376439)
chr4 (144-244)||(2621192-2621292)
chr4 (126-169)||(1547469-1547512)
chr4 (129-172)||(2373256-2373299)
chr4 (105-180)||(2460589-2460664)
chr4 (126-173)||(12126879-12126926)
chr4 (386-427)||(2373488-2373529)
chr4 (124-169)||(6007668-6007713)
chr4 (457-498)||(12124522-12124563)
[»] chr1 (3 HSPs)
chr1 (105-229)||(15837955-15838079)
chr1 (108-155)||(9581951-9581998)
chr1 (108-154)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (125-169)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (124-169)||(32152209-32152254)
chr8 (105-170)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (114-169)||(10578802-10578857)
[»] chr5 (3 HSPs)
chr5 (123-169)||(32268773-32268819)
chr5 (124-169)||(41900267-41900312)
chr5 (374-431)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Original strand, 2390893 - 2391591
Alignment:
Q  1 ccaaggttccaaaaacgatggcagcggaaacagcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatca 100  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  2390893 ccaaggttccaaaaacgatggcagcggaaacagcaaaagagtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatgaagacca 2390992  T
Q  101 ctatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttc 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2390993 ctatactttcaagtctctttctatcgtctcgaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttc 2391092  T
Q  201 attcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  2391093 attcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaatgcaatcgccccaacacgcttc 2391192  T
Q  301 ttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagat 400  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2391193 ttacccaaatctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctttgtccaaaaagat 2391292  T
Q  401 gaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgtt 500  Q
    |||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2391293 gaaaaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaacttgtt 2391392  T
Q  501 ctcaaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaaga 600  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2391393 ctcaaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccgaaaga 2391492  T
Q  601 ttagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgat 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391493 ttagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgat 2391591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 513
Target Start/End: Original strand, 2381284 - 2381777
Alignment:
Q  20 ggcagcggaaacagcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctt 119  Q
    |||||| | ||||||| ||| |||||||| ||||||||||||  | |||||||||||||||||||||||  ||||||| ||||  |||||||||||||||    
T  2381284 ggcagcagcaacagcaaaagcgtgttcaagtttaccagatgacctatgggaatacatcatcaaattcctcaatggagaccactgcactttcaagtctctt 2381383  T
Q  120 tctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaac 219  Q
    || |||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2381384 tccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgtcaaaatcaccctacaaaccatccctttcattcctcaactcttccaac 2381483  T
Q  220 ggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaatctccacttt 319  Q
    | ||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  2381484 gcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctctacacaatcaccccaacatgcttcttacccaaatctccgcttt 2381583  T
Q  320 ccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctctt 419  Q
    |||||||||||||| |||||||||| | ||||| || |  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381584 ccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctctt 2381683  T
Q  420 acttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacag 513  Q
    |||||||  |||       ||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| ||||||||| ||||||    
T  2381684 acttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaacag 2381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 512
Target Start/End: Original strand, 2380042 - 2380512
Alignment:
Q  33 gcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctcca 132  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||    
T  2380042 gcagaagcatgttcaaatttaccagatgagttatgggaatacatcatcaaattccttgatggagaccactgtactgtcaagtctctttccatcgtctcca 2380141  T
Q  133 aacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgt 232  Q
    |||| |||||||| |||||| ||| | |||||||| || |||||||||||||||||||||||||||| |||||||   |||| ||| |||    |||  |    
T  2380142 aacagttactctcgatcacctacagtttccgattcaccctcaaaatcacccaacaaaccatcccttttattcctcgcctcttgcaaaggtgtcgtaacat 2380241  T
Q  233 cacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctc 332  Q
    ||||||||||||||||||||||| |||||         || ||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||| |||    
T  2380242 cacatccctcaatctcacatccatcaacc---------tccctcaatacaatcacctcaacacgcttcttacacaaatctccgctttacctttagatctc 2380332  T
Q  333 agatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaan 432  Q
    | |||||||||||| |||||| ||| |||||| || ||| |||| || ||| |||||||||||||||||||||||||||| ||| | |  |||||| ||     
T  2380333 aaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctttgtccaaaaagatgaaaaatttgacttctttcatgtgtttcaaaa 2380432  T
Q  433 nnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca 512  Q
          ||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  2380433 ttacttggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaaggaaaca 2380512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 189 - 699
Target Start/End: Original strand, 2382562 - 2383069
Alignment:
Q  189 accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacc 288  Q
    |||||||||||||||||||   |||||| | || || |||||||||||||||||||| ||||||||  |||||||| | ||||||||||| ||||| |||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc 2382661  T
Q  289 ccaacacgcttcttacccaaa-tctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctt 387  Q
     ||||||||||||||  |||| ||||   ||  |||||||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || |||||||    
T  2382662 tcaacacgcttcttatgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctt 2382761  T
Q  388 tgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttact 487  Q
    ||||||||||||||||||| ||||| ||| | | ||||||| ||         || |   ||||||||||||  |||||||   ||||||||||||||||    
T  2382762 tgtccaaaaagatgaaaaaattgacttctttcatttgtttcaaa---------attacgtagaaggatatctatttcattgccaattgcttccctttact 2382852  T
Q  488 tgaagaacttgttctcaaggaaacagactgcactgat---tacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcactt 584  Q
     || | ||| |||||||||||||||   |||   | |   ||| ||||| || |||| ||  |||||||||||||||| |||||||| ||||||||||||    
T  2382853 cgatgtactcgttctcaaggaaacatgatgcgtaggtcagtacccttctacttggaacttttattttgtgctagatgatgataatcaatttttggcactt 2382952  T
Q  585 cccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaata 682  Q
    ||||||||||||||||||| |||||||||| ||  ||||||||||||| ||||| ||||||| | ||  |||| | |||||||  |||||||||||||||    
T  2382953 cccaaactccgaaagattaatttgtatggtaattccatcgatagccaaattattaattatcttcgcaaaaaccgtggacctttcacagaggagaagaata 2383052  T
Q  683 acctagatggtgatgat 699  Q
    || |||||||| |||||    
T  2383053 acttagatggtaatgat 2383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 546 - 699
Target Start/End: Original strand, 2380558 - 2380713
Alignment:
Q  546 gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc 645  Q
    ||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| |   ||||||||||||| ||||| ||||||    
T  2380558 gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc 2380657  T
Q  646 tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgat 699  Q
    ||| ||  |||| | |||||||||  ||||||||||||||| |||||||| |||||    
T  2380658 tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgat 2380713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 588 - 700
Target Start/End: Original strand, 2381814 - 2381928
Alignment:
Q  588 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc 685  Q
    |||||||||||||||||||||  ||||  | |||| ||| ||||||||||| ||||||||| || ||||| | |||||||  ||||| |||||||||||     
T  2381814 aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact 2381913  T
Q  686 tagatggtgatgatg 700  Q
    |||||||| ||||||    
T  2381914 tagatggtaatgatg 2381928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 496
Target Start/End: Complemental strand, 2534124 - 2533992
Alignment:
Q  364 ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttctt 463  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||| || ||||| |||||||   ||         ||||||||||| ||| |||||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttctt 2534025  T
Q  464 cattgttgattgcttccctttacttgaagaact 496  Q
     |||| |||||| ||||||||||||||||||||    
T  2534024 gattgctgattgtttccctttacttgaagaact 2533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 2367678 - 2367735
Alignment:
Q  115 ctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 172  Q
    ||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccat 2367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 2621399 - 2621462
Alignment:
Q  363 attcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 426  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgtt 2621462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 496
Target Start/End: Complemental strand, 2547346 - 2547223
Alignment:
Q  373 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttga 472  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | ||||| | ||         |||| |||||| ||| | |||||||||| |||    
T  2547346 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctga 2547247  T
Q  473 ttgcttccctttacttgaagaact 496  Q
    ||| ||||||||||||||||||||    
T  2547246 ttgtttccctttacttgaagaact 2547223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 426
Target Start/End: Complemental strand, 2525625 - 2525504
Alignment:
Q  305 ccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaa 404  Q
    ||||||||||||||||||||||||||||| |||||||| ||| | | ||  |  |||  ||||| || ||| ||| || | ||||||||| || ||||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaa 2525526  T
Q  405 aatttgacctctcttacttgtt 426  Q
    |||||||| ||||| |||||||    
T  2525525 aatttgacatctctcacttgtt 2525504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 2367923 - 2368032
Alignment:
Q  387 ttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttac 486  Q
    |||||||||| ||||||||| ||||||||||||||||||| || |       | ||  ||||||  ||| |||||||||||| |||||| ||||||||||    
T  2367923 ttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtattcacaagagtgatctcttcttcattgctgattgtttccctttac 2368022  T
Q  487 ttgaagaact 496  Q
    | ||||||||    
T  2368023 tcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 2376161 - 2376289
Alignment:
Q  41 gtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaatta 140  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||||||| |  || ||  ||    |||| |||||||| || ||||||||||||   ||     
T  2376161 gtgttcatatttaccatatgagttatgggaatacatcatcaaattcctcgccggcgacaacccctctttgaagtctctctccatcgtctccaaaactttt 2376260  T
Q  141 ctctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||||  | ||||||||||    
T  2376261 ctctccatcaccaaccgtttccgattctc 2376289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  386 tttgtccaaaaagatgaaaaatttgacctctcttacttgtt 426  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  381 cgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 426  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 2467423 - 2467294
Alignment:
Q  297 cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa 396  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||| ||| | | ||  |   |   |||||  ||||||||| |||||||| ||||||     
T  2467423 cttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaag 2467324  T
Q  397 agatgaaaaatttgacctctcttacttgtt 426  Q
    |||||||||||||||| || || |||||||    
T  2467323 agatgaaaaatttgacatcactcacttgtt 2467294  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 2486101 - 2486064
Alignment:
Q  381 cgagctttgtccaaaaagatgaaaaatttgacctctct 418  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2486101 cgagctttgtccaaaaagatgaaaaatttgacatctct 2486064  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
Q  301 ttacccaaatctccactttccctttagacctca 333  Q
    |||||||||||||||||||||||||||||||||    
T  2376407 ttacccaaatctccactttccctttagacctca 2376439  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 2621192 - 2621292
Alignment:
Q  144 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 243  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2621192 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 2621291  T
Q  244 a 244  Q
    |    
T  2621292 a 2621292  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  126 gtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 2373256 - 2373299
Alignment:
Q  129 tccaaacaattactctccatcaccaacaatctccgattctccat 172  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccat 2373299  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 2460664 - 2460589
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatca 180  Q
    |||||||| ||||| || || ||||||||||| || ||||||||||||||   ||||||||||||  |||||||||    
T  2460664 actttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaaatca 2460589  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 12126926 - 12126879
Alignment:
Q  126 gtctccaaacaattactctccatcaccaacaatctccgattctccatc 173  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctccatc 12126879  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 2373488 - 2373529
Alignment:
Q  386 tttgtccaaaaagatgaaaaatttgacctctcttacttgttt 427  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  2373488 tttgtccgaaaagatgaaatatttgacctctctcacttgttt 2373529  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 6007713 - 6007668
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||||    
T  6007713 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
Q  457 tcttcttcattgttgattgcttccctttacttgaagaacttg 498  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttg 12124522  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 15837955 - 15838079
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 204  Q
    ||||||||||| || || || ||||||||||| || |||||||||||||||  ||||||||||||| |||||||||   | ||||| |||||||||||||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  205 ctcaaatcttccaacggttctctaa 229  Q
    || |  |||||||| ||||| ||||    
T  15838055 ctaacctcttccaaaggttccctaa 15838079  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 9581998 - 9581951
Alignment:
Q  108 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaac 155  Q
    ||||||||||||||| ||||||||||||| || ||||| |||||||||    
T  9581998 ttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 9587556 - 9587510
Alignment:
Q  108 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaa 154  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||    
T  9587556 ttcaagtctctttctgtcgtctccaaacagtttctctccgtcaccaa 9587510  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 513446 - 513490
Alignment:
Q  125 cgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  513446 cgtctcaaaacagttactctccatcaccaacaatctccgattctc 513490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 32152254 - 32152209
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  32152254 tcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 39516924 - 39516859
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctcc 170  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||||||  |||| ||||||||    
T  39516924 actttcaagtctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  114 tctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 32268819 - 32268773
Alignment:
Q  123 atcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  32268819 atcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 41900267 - 41900312
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||||||||| || |||||||||||||||| ||| ||||||||    
T  41900267 tcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 41900496 - 41900553
Alignment:
Q  374 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaa 431  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||    
T  41900496 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaa 41900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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