View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_22 (Length: 302)
Name: NF1509_low_22
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 9073056 - 9073341
Alignment:
| Q |
1 |
ccatgcatgtaactaaaaagatttgttggatcggttacaatttggaagaatcaagattttatacagaatagaatactgttaatatataagtgtatgcatt |
100 |
Q |
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| T |
9073056 |
ccatgcatgtaactaaaaagatttgttggatcggttacaattttgaagaatcaagattttatatagaatagaatactgttaata----attgtatgcatt |
9073151 |
T |
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| Q |
101 |
aacatttttaaatgaagggtataacaccttcgccctataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggtt |
200 |
Q |
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| T |
9073152 |
aacatttttaaatgaagggtataacaccttcgccctataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggtt |
9073251 |
T |
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| Q |
201 |
ctgagcttcttcaaggcaattttttcactctgatttttatcgaccattcttccttatttatataaataatcaacatcatattgtaatatt |
290 |
Q |
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| T |
9073252 |
ctgagcttcttcaaggtaattctttcactctgatttttatcgaccattcttccttatttatataaataatcaacatcatattgtaatatt |
9073341 |
T |
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