View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_23 (Length: 289)
Name: NF1509_low_23
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 9877778 - 9877527
Alignment:
| Q |
22 |
tggaaaaacgtcctctccaaccgtccaccaccgcgaacattccttcgaaaacaatcgaagaaatgtaccaaaagaaaacacagctcgaacacattctcct |
121 |
Q |
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| T |
9877778 |
tggaaaaacgtcctctccaaccgtccaccaccgcaaacattccttcgaaaacaattgaagaaatgtaccaaaagaaaacacagctcgaacacattctcct |
9877679 |
T |
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| Q |
122 |
ccgtcccgacacctatgtcggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgttcaatctcctacgttccc |
221 |
Q |
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| T |
9877678 |
ccgtcccgatacctacgtcggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgttcaatctcctacgttccc |
9877579 |
T |
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| Q |
222 |
ggtctctacaagatcttcgacgagattctcgtcaatgctgctgataacaaac |
273 |
Q |
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| T |
9877578 |
ggtctctacaagatcttcgacgagattctcgtcaatgctgctgataacaaac |
9877527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 251
Target Start/End: Complemental strand, 38841605 - 38841459
Alignment:
| Q |
105 |
ctcgaacacattctcctccgtcccgacacctatgtcggttcaattgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttaaccgtt |
204 |
Q |
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||||||||||||||||||| |||||| || || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38841605 |
ctcgaacacattctcctccatcccgatacgtacataggttcaactgaaaaacacactcaaaatctatgggtttacgaaaacgaagaaatggttcaccgtt |
38841506 |
T |
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| Q |
205 |
caatctcctacgttcccggtctctacaagatcttcgacgagattctc |
251 |
Q |
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| T |
38841505 |
ctgtttcctacgttcctggactttacaaaatctttgacgagattctc |
38841459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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