View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_26 (Length: 269)
Name: NF1509_low_26
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 36148029 - 36147855
Alignment:
| Q |
19 |
cgacccataactgagtgaagcagtggtagtgttgtttcgtattttattaccccataagggttcttgaactgggtggttatttcctttatgaaagaaacga |
118 |
Q |
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| T |
36148029 |
cgacccataactcagtgaagcagtggtagcgttgtttcgtattttattaccccataagggttcttgaactgggtggttatttcctttatgaaagaaacga |
36147930 |
T |
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| Q |
119 |
gaagtgttgaaaaatgtgttgtttggggaatgaaggagtgttgtgaaagaatgattttcttgttgaataatgtgt |
193 |
Q |
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| T |
36147929 |
gaagtgttgaaaaatgtgttgtttggggaatgaaggagtgttatgaaagaatgattttcttgttgaataatgtgt |
36147855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 36147820 - 36147792
Alignment:
| Q |
228 |
tgaaaacaacgtcggtggaggaaatgatg |
256 |
Q |
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| T |
36147820 |
tgaaaacaacgtcggtggaggaaatgatg |
36147792 |
T |
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