View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_28 (Length: 251)
Name: NF1509_low_28
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 3307621 - 3307397
Alignment:
| Q |
10 |
attattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaatcagtttctatcgcattccttttgtattgtgtgtgta |
109 |
Q |
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| T |
3307621 |
attattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaatcagtttctatcgcattccttttgtattgtgtgtgta |
3307522 |
T |
|
| Q |
110 |
tgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaattaatccgattcagaatcagtttctatcacattcctt |
209 |
Q |
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| T |
3307521 |
tgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaattactccgattcagaatcagtttctatcacattcctt |
3307422 |
T |
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| Q |
210 |
ttgtggtgtcctatttccttgaact |
234 |
Q |
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||||||||||||||||||||||||| |
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| T |
3307421 |
ttgtggtgtcctatttccttgaact |
3307397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 3300916 - 3300855
Alignment:
| Q |
11 |
ttattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaa |
72 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3300916 |
ttattcagccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggtttagaa |
3300855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 3300941 - 3300868
Alignment:
| Q |
102 |
tgtgtgtatgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaatta |
175 |
Q |
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|||||||||||||||| ||||||| | | ||||||||||| ||||||||||||||| |||||| |||||| |
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| T |
3300941 |
tgtgtgtatgcaatctggttgtgagttattcagccagaattgtcattaataaagtgttcgtattgtgcaaatta |
3300868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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