View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509_low_29 (Length: 250)
Name: NF1509_low_29
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 51960143 - 51960342
Alignment:
| Q |
13 |
aatatactgattaataaggactaaactattgttcatacatataacaatgcattatttcttccagcccagca---atcaaggactaatcaattatgctctt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||||||| |||||| |
|
|
| T |
51960143 |
aatatagtgattaataaggactaaactatcgttcatacatataacaatgcattatttctgtcagccgagcacctaacaaggactaatcaattaagctctt |
51960242 |
T |
|
| Q |
110 |
acctcttaccaaacgggtgtttgtggaaagtttatgcttgtgaatcgcgagttcatgaccctttattagcgttgacacgaggctactatccctgtgttta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51960243 |
acctcttaccaaacgggtgtttgtggaaagtttaagcttgtgaatcgcgagttcatgaccctttattagcgttgacacgaggc-actatccctgtgttta |
51960341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University