View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509_low_3 (Length: 591)
Name: NF1509_low_3
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 6 - 576
Target Start/End: Original strand, 31127137 - 31127706
Alignment:
| Q |
6 |
gaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaagga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31127137 |
gaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactc-gccacaagaatcgttagggaaaagaaaaagga |
31127235 |
T |
|
| Q |
106 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127236 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagc |
31127335 |
T |
|
| Q |
206 |
tttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127336 |
tttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaag |
31127435 |
T |
|
| Q |
306 |
ttatgggaaaatcggaaacggttaattacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31127436 |
ttatgggaaaatcggaaacggttaattacaatgaggtgaaggatatggtttacactcatgcggctttatgtgagagtatgagactgtatcctccggttcc |
31127535 |
T |
|
| Q |
406 |
cgtggatggtaaggaagcggcttctgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaagg |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127536 |
cgtggatggtaaggaagcggcttgtgacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaagg |
31127635 |
T |
|
| Q |
506 |
tccgagaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagccaagttgatgatgg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31127636 |
tccgagaaaatatggggacccgattgggctgagtttcgacctgagagatggttgagtcaagttgatgatgg |
31127706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 31 - 576
Target Start/End: Original strand, 31077844 - 31078388
Alignment:
| Q |
31 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaa |
130 |
Q |
| |
|
|||||||| || |||||||| | ||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||||||| || | |||||| |
|
|
| T |
31077844 |
gagcgacgattgaaagaagccgtcgctgaagtaagaggactt-gctacaagaatcgttagggaaaagaaaaaagagcttaaagaaaaagcaactttggaa |
31077942 |
T |
|
| Q |
131 |
tcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaa |
230 |
Q |
| |
|
||| | ||| || |||| || ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31077943 |
tcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaagatacaa |
31078042 |
T |
|
| Q |
231 |
cttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaacggttaa |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| || || ||| |||||||| |||| |||| |
|
|
| T |
31078043 |
cttcagctgcactcacgtggttcttttggctactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatcagaaatagttag |
31078142 |
T |
|
| Q |
331 |
ttacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttct |
430 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||| |||||| ||| ||||| || | |
|
|
| T |
31078143 |
ttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtac |
31078242 |
T |
|
| Q |
431 |
gacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgatt |
530 |
Q |
| |
|
| || |||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
31078243 |
aatgatgttttgccagatggaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcggagaaaatatggggacttgatt |
31078342 |
T |
|
| Q |
531 |
gggctgagtttcgacctgagagatggttgagccaagttgatgatgg |
576 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||| ||| ||||| |
|
|
| T |
31078343 |
gggctgagtttcgaccggagaggtggttgagtcaagatgaggatgg |
31078388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 561
Target Start/End: Original strand, 31131870 - 31132399
Alignment:
| Q |
31 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaa |
130 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| || ||| ||||||| ||| ||||||||||||||||| |||||| ||||||| | | |||||| |
|
|
| T |
31131870 |
gagcgacggttgaaagaagctgtcgctgaagtaagggggctc-gccacaaaaattgttagggaaaagaaaaaagagcttaaagaaaaggaaaccttggaa |
31131968 |
T |
|
| Q |
131 |
tcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaa |
230 |
Q |
| |
|
|| |||||||| | || |||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31131969 |
tcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattcttgctgggagagatacaa |
31132068 |
T |
|
| Q |
231 |
cttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaacggttaa |
330 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||| || || ||| ||||||| | |||| |
|
|
| T |
31132069 |
cttcagctgcactcacgtggttctttttgttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttag |
31132168 |
T |
|
| Q |
331 |
ttacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttct |
430 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||| | |||||||||||||||||| || | ||||| ||| | ||||||| ||||||||| || | |
|
|
| T |
31132169 |
taacgatgaggtgaagaatatggtttacactcatgcatcgttatgcgagagtatgagaatggaccctccagtttcagtggatgctaaggaagcagcctac |
31132268 |
T |
|
| Q |
431 |
gacgacgttttgccggatggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgatt |
530 |
Q |
| |
|
|| || |||||||| |||||||| ||||||||||||||||||| || | |||||| |||||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
31132269 |
gatgatgttttgccagatggaacattagtgaagaaagggtggatagttgcgtatcatgtatatgttatgggaaggtctgagaaaatatggggatccgatt |
31132368 |
T |
|
| Q |
531 |
gggctgagtttcgacctgagagatggttgag |
561 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |
|
|
| T |
31132369 |
gggctgagttttgacctgagaggtggttgag |
31132399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 31128817 - 31129011
Alignment:
| Q |
6 |
gaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaagga |
105 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
31128817 |
gaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgttgaagtaagaggactc-gccacaagaatcgttagggaaaagaaaaaaga |
31128915 |
T |
|
| Q |
106 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaat |
201 |
Q |
| |
|
| ||| |||||||||| |||||||||||||| ||||||| ||||| || |||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
31128916 |
gtttgtagaaaaatcagtgttggaatcattggttattctaccacgacgcttgagttacgcacattcagaagaatcttttgcagttgatattgtaat |
31129011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13252 times since January 2019
Visitors: 1253