View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_30 (Length: 250)
Name: NF1509_low_30
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 42801004 - 42800825
Alignment:
| Q |
64 |
gcatgagtttcatgaatttaaccaccgtcactgctttcatcttcaactaacccctttcccaagtttcattaatcctcctaattttcttcattccttttta |
163 |
Q |
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| T |
42801004 |
gcatgagtttcatgaatttaaccaccgtcactgctttcatcttcaactaacccctttcccaagtttcattaatcctcctaattttcttcattccttttta |
42800905 |
T |
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| Q |
164 |
t---tacttaccatctttatcttaatttaatttcatcattcagataacccaaatcttctccttcaagataacaaaaacgc |
240 |
Q |
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| T |
42800904 |
ttactacttcccatctttatcttaatttaatttcatcattcagataacccaaatcttctccttcaagataacaaaaacgc |
42800825 |
T |
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