View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509_low_7 (Length: 449)

Name: NF1509_low_7
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509_low_7
NF1509_low_7
[»] chr5 (2 HSPs)
chr5 (18-449)||(27640166-27640597)
chr5 (29-137)||(40767164-40767271)
[»] chr3 (2 HSPs)
chr3 (18-140)||(8029221-8029343)
chr3 (16-71)||(40362023-40362078)
[»] chr6 (3 HSPs)
chr6 (18-139)||(33794478-33794599)
chr6 (18-139)||(7385351-7385474)
chr6 (21-83)||(27176998-27177060)
[»] chr7 (4 HSPs)
chr7 (18-95)||(21836040-21836117)
chr7 (36-136)||(24604687-24604787)
chr7 (23-137)||(23961654-23961768)
chr7 (23-133)||(24972902-24973012)
[»] chr2 (4 HSPs)
chr2 (24-83)||(29923903-29923962)
chr2 (18-93)||(35978834-35978909)
chr2 (23-83)||(5357609-5357669)
chr2 (16-132)||(29927702-29927817)
[»] chr8 (1 HSPs)
chr8 (23-83)||(31645145-31645205)
[»] chr4 (1 HSPs)
chr4 (32-83)||(43148897-43148948)
[»] chr1 (1 HSPs)
chr1 (25-83)||(22023172-22023231)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 27640597 - 27640166
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttg 117  Q
    ||||||| || ||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||| |   ||||| |||||||| |||     
T  27640597 aatttcaccggcagttaactgccgtctgttaaaaactatcgacagttaattacagatgaggttataatgatatttttcgagtattttttagcacttttta 27640498  T
Q  118 atgtgggaacaacaatcttcatgttttaggtgctttagtatatatcacatcaatagaaagtatagtggtactacgaggtgggaccaattcctacaaagct 217  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640497 atgtgggaacaacgatcttcatgttttaggtgcattagtatatatcacatcaatagaaagtatagtggtactacgaggtgggaccaattcctacaaagct 27640398  T
Q  218 ttttaccgcaaagttccataacctaaagttaggccatcaatggttaacaaggagagatagaccatcaggtggagtgagctttggatatgattcacaattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27640397 ttttaccgcaaagttccataacctaaagttaggccatcaatggttaacaaggagagatagaccgtcaggtggagtgagctttggatatgattcacaattg 27640298  T
Q  318 ctgctaggtgggtccctaatttaagtccatataattcttgggttgaatggtcaagctacaaattattaatgttcatgtgaaacattagatactctttttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27640297 ctgctaggtgggtccctaatttaagtccatataattcttgggttgaatggtcaagctacaaattattaatgttcatgtgaaacattagatactctttttt 27640198  T
Q  418 catcttgtagtcccatcatcgccttctccact 449  Q
    ||||||||||||||||||||||||||||||||    
T  27640197 catcttgtagtcccatcatcgccttctccact 27640166  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 40767164 - 40767271
Alignment:
Q  29 cagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttgatgtgggaaca 128  Q
    ||||||| ||||||||||||||| | ||||||| | |||| |  | ||||||||| || |||||| | | | |||| |||||| ||||||||||||||||    
T  40767164 cagttaattgccgtcggttaaaacccatcgacagt-aacttccaaagaggttatattggtatttttctggtgtttcatagcaccctttgatgtgggaaca 40767262  T
Q  129 acaatcttc 137  Q
     ||||||||    
T  40767263 tcaatcttc 40767271  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 8029221 - 8029343
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttg 117  Q
    |||| ||||| |||||||||| ||||||||||||   |||| || |||| ||| |||||||||||| || |||||| ||| | ||| ||||||| |||||    
T  8029221 aattccatcggcagttaactgtcgtcggttaaaactcatcggcagttaattgccgatgaggttatattggtatttttccggtgttttttagcaccctttg 8029320  T
Q  118 atgtgggaacaacaatcttcatg 140  Q
    |||||||||||||||||||||||    
T  8029321 atgtgggaacaacaatcttcatg 8029343  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 40362078 - 40362023
Alignment:
Q  16 caaatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgca 71  Q
    |||||||||| || |||||||| ||||||||||||| | ||||||| |||||||||    
T  40362078 caaatttcattgatagttaactaccgtcggttaaaatccatcgacagttaactgca 40362023  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 33794599 - 33794478
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttg 117  Q
    |||||||||  ||||||||||||  || |||||||  ||||||| |||||||  |||||||||||| | ||||||||| ||| |||| |||||  |||||    
T  33794599 aatttcatcagcagttaactgccaccgattaaaaatcatcgacagttaactgatgatgaggttatattaatattttcctgatgtttcctagcatcctttg 33794500  T
Q  118 atgtgggaacaacaatcttcat 139  Q
    ||||||||||||||||||||||    
T  33794499 atgtgggaacaacaatcttcat 33794478  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 7385351 - 7385474
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggtta--taatgatattttcccgatatttcttagcactctt 115  Q
    |||| |||||| |||||||||||| ||||||||| | |||  || |||||||| || || ||||  || | ||||||||  | |||||| |||||| |||    
T  7385351 aattacatcgatagttaactgccgccggttaaaacccatcatcagttaactgccgaagaagttaaatattaatattttcatggtatttcctagcaccctt 7385450  T
Q  116 tgatgtgggaacaacaatcttcat 139  Q
    ||||||||||||||||||||||||    
T  7385451 tgatgtgggaacaacaatcttcat 7385474  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 27177060 - 27176998
Alignment:
Q  21 ttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttata 83  Q
    ||||||||||||||||||||| || ||||||   ||||| | |||||||| ||||||||||||    
T  27177060 ttcatcgacagttaactgccgccgattaaaattcatcgatagttaactgccgatgaggttata 27176998  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 21836040 - 21836117
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcc 95  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| |||||||| ||| |||||||| || ||||||||    
T  21836040 aatttcatcgacagttaactgtcgtcggttaaaaaccatcaacagttaactgccgataaggttatattggtattttcc 21836117  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 24604687 - 24604787
Alignment:
Q  36 ctgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttgatgtgggaacaacaatct 135  Q
    |||||| ||||||||||| || |||| |||||||  |||||||||||| || |||||||| | | |||| |||| | ||||||  | |||||||||||||    
T  24604687 ctgccgccggttaaaaaccattgacagttaactgtcgatgaggttatattggtattttcctggtgtttcctagctccctttgacataggaacaacaatct 24604786  T
Q  136 t 136  Q
    |    
T  24604787 t 24604787  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 23961654 - 23961768
Alignment:
Q  23 catcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttgatgtg 122  Q
    ||||||||||||||| ||  ||||||||| | || |||| |||||||  || || |||||  ||||||||||  |||||||  || ||| |||| | |||    
T  23961654 catcgacagttaactaccaccggttaaaatccattgacagttaactgtcgaagatgttatgttgatattttcgtgatattttctaccaccctttaacgtg 23961753  T
Q  123 ggaacaacaatcttc 137  Q
    |||||||||||||||    
T  23961754 ggaacaacaatcttc 23961768  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 24973012 - 24972902
Alignment:
Q  23 catcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctttgatgtg 122  Q
    |||||| |||||||| ||| ||||||||| | |||| || |||||||  ||||| |||||| || || ||||  ||| |||| |||  | ||||||||||    
T  24973012 catcgatagttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattggtaatttcgtgatgtttcctagacccctttgatgtg 24972913  T
Q  123 ggaacaacaat 133  Q
    |||||||||||    
T  24972912 ggaacaacaat 24972902  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 29923903 - 29923962
Alignment:
Q  24 atcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttata 83  Q
    |||||||||||||||||| ||||||||| | |||  ||||||||||| ||||||||||||    
T  29923903 atcgacagttaactgccgccggttaaaatccatcagcaattaactgccgatgaggttata 29923962  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 35978909 - 35978834
Alignment:
Q  18 aatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatatttt 93  Q
    ||||||||||||||||||||||| ||||||||||||  | || | |||||| | |||||||||||| | |||||||    
T  35978909 aatttcatcgacagttaactgccatcggttaaaaacctttgatagttaactaccgatgaggttatattaatatttt 35978834  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 5357609 - 5357669
Alignment:
Q  23 catcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttata 83  Q
    ||||||||||||||||  | ||||||||  | ||||||| |||||||| ||||||||||||    
T  5357609 catcgacagttaactgttgccggttaaattccatcgacagttaactgccgatgaggttata 5357669  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 29927817 - 29927702
Alignment:
Q  16 caaatttcatcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttataatgatattttcccgatatttcttagcactctt 115  Q
    ||||||||||||  ||||||||  |||||||||||| | |||  || |||||||| |||||||||||| || || ||||  | | |||| || ||  |||    
T  29927817 caaatttcatcgg-agttaactatcgtcggttaaaatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttcctatcaacctt 29927719  T
Q  116 tgatgtgggaacaacaa 132  Q
    |||||||||||||||||    
T  29927718 tgatgtgggaacaacaa 29927702  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 31645205 - 31645145
Alignment:
Q  23 catcgacagttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttata 83  Q
    ||||| ||||||||||||||||||||||| | |||| || |||| ||| ||||||||||||    
T  31645205 catcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttata 31645145  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 43148948 - 43148897
Alignment:
Q  32 ttaactgccgtcggttaaaaactatcgacaattaactgcagatgaggttata 83  Q
    |||||||| ||||||| ||| | |||||||||||||||| ||||||||||||    
T  43148948 ttaactgctgtcggttgaaatccatcgacaattaactgccgatgaggttata 43148897  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 22023231 - 22023172
Alignment:
Q  25 tcgacagttaactgccgtcggttaaaaa-ctatcgacaattaactgcagatgaggttata 83  Q
    |||||||||||||| ||||||||||||| | |||| || |||||||| ||||||||||||    
T  22023231 tcgacagttaactgtcgtcggttaaaaatccatcggcagttaactgccgatgaggttata 22023172  T

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