View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509_low_9 (Length: 428)
Name: NF1509_low_9
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 110 - 409
Target Start/End: Original strand, 52169943 - 52170243
Alignment:
| Q |
110 |
atcataatctaatgattctgatccggtgaccgcacctgacttcatgtggttgtgattacatctaatcgaatctaatccaattccattaattccaatggat |
209 |
Q |
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| T |
52169943 |
atcataatctaatgattctgatctggtgaccgtacctgacttcatgtggttgtgattacatctaatcgaatctaatccaattccattaattccaatggat |
52170042 |
T |
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| Q |
210 |
ccacttcaacagttacatggacgtgccatctggaatgaagtcaggtgcggtcaccagatcaatatacgtgtctactcaagtgatgcatgatagtgtcaag |
309 |
Q |
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| T |
52170043 |
ccacttcaaccgttacatggacgtgccatctggaatgaagtcaggtgcggtcaccagatcaatatacgtgtctactcaaatgatgcatgatagtgtcaag |
52170142 |
T |
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| Q |
310 |
ttcaatatgcactccactt-aaagcaaatagcaaggaatgcatgtgcaagtgaaatatgtgtgtatacaaacaaaatcagcgggtcagcctagagacagg |
408 |
Q |
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| T |
52170143 |
ttcaatatgcactgcacttaaaagcaaatagcaaggaatgcatgtgcaagtgaaatatgtgtgtatacaaacaaaatcagcgggtcagcctagagacagg |
52170242 |
T |
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| Q |
409 |
g |
409 |
Q |
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| T |
52170243 |
g |
52170243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 52169814 - 52169915
Alignment:
| Q |
11 |
cacagatcagtgatggcgtacagtaagaaagctagtagaagtatctgatcttgatcagaccatccataatttaacatcaaaattttatactaaacgtaaa |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52169814 |
cacagatcagtgatggcgtaaagtaagaaagctagtagaactgtctgatcttgatcagaccatccataatttaacatcagaattttatactaaacgtaaa |
52169913 |
T |
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| Q |
111 |
tc |
112 |
Q |
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| T |
52169914 |
tc |
52169915 |
T |
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