View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15100_low_1 (Length: 716)
Name: NF15100_low_1
Description: NF15100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15100_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 45992881 - 45993375
Alignment:
| Q |
11 |
cacagaccacataagcaacaacgagacagaactaatgtacacaaaaaatcaaccactctagtgaacattaaataacttataaaagaactccaagtcatga |
110 |
Q |
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| T |
45992881 |
cacagaccacataagcaacaacgagacagaactagtgtacacaaaaaaccaaccactctagtaaacattaaataacttataaaagaactccaattcatga |
45992980 |
T |
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| Q |
111 |
tcccacacctacaatcttcacacaatgtcatgtcatcatcttcatcatcttcatccggtaaaaaccatggacctttcttcactctccatccctcgcatgt |
210 |
Q |
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| T |
45992981 |
tcccac--ctacaatcttcacacaatgtcatgtcat---------catcttcatccggtaaaaaccatggacctttcttcactctccatccctcgcatgt |
45993069 |
T |
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| Q |
211 |
gctcttcgagttgcatagagcaatttgattgcgcattaacatcccattatttttccacatatcttttgttaaatatttaaccttactccttgaactcaca |
310 |
Q |
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| T |
45993070 |
gctcttcgagttgcatagagcaatttgattgcgcattaacatcccattatttttccacatatcttttgttaaatatttaaccttactccttgaactcaca |
45993169 |
T |
|
| Q |
311 |
atacatttggacttcctcaagaaacgcatatgctcaattaaagtccttgttttcttgactcatgattttcggaacacaacaagatcatatcatacatgta |
410 |
Q |
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| T |
45993170 |
atacatttggacttcctcaagaaacgcatatgctc-----aagtccttgttttcttgactcatgattttcggaacacaacaagatcataccatacataca |
45993264 |
T |
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| Q |
411 |
tatatatggcctccttgtgacctttttcagcagcaatctttaatctctcaagaccatcaatgtttccatttggatagccaaagtattcaagcaatccttc |
510 |
Q |
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| T |
45993265 |
tgtatatggcctccttgtgacctttttcagcagcaatctttaatctctcaagaccatcaatatttccatttggatagccaaagtattcaagcaatccttc |
45993364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 520 - 701
Target Start/End: Original strand, 45993419 - 45993600
Alignment:
| Q |
520 |
tacgttctcattcagaaaccattggatcaatggaaaattgtcgaaagaaatttgttgtaacacatatcattcttgggtgagttcaagaaaatatttgcaa |
619 |
Q |
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| T |
45993419 |
tacgttctcattcagaaaccattggatcaatggaaaattgtcgaaagaaatttgttgtaacacatatcattcttgggtgagttcaagaaaatatttgcaa |
45993518 |
T |
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| Q |
620 |
caaactttcattttatgaaagtcaccaagagatttagcggctattgttgcaaacacatggattagcaagtctttgggaattg |
701 |
Q |
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| T |
45993519 |
caaactttcattttatgaaagtcactaagagatttagcggctattgttgcaaacacatcgattagcaagtctttgggaattg |
45993600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 35454406 - 35454462
Alignment:
| Q |
173 |
aaccatggacctttcttcactctccatccctcgcatgtgctcttcgagttgcataga |
229 |
Q |
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| T |
35454406 |
aaccatcgacctttcttcactctccatcccttgcatgtgctcttggagttgcataga |
35454462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 35454318 - 35454384
Alignment:
| Q |
68 |
ctagtgaacattaaataacttataaaagaactccaagtcatgatcccacacctacaatcttcacacaat |
136 |
Q |
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| T |
35454318 |
ctagtgaacattaaacaacttataaaagaacattaactcatgatcc--aatctacaatcttcacacaat |
35454384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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