View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15100_low_2 (Length: 693)

Name: NF15100_low_2
Description: NF15100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15100_low_2
NF15100_low_2
[»] chr6 (12 HSPs)
chr6 (63-446)||(11195354-11195737)
chr6 (63-446)||(11154907-11155290)
chr6 (198-336)||(11246449-11246591)
chr6 (63-362)||(11208096-11208391)
chr6 (183-242)||(11315989-11316048)
chr6 (81-146)||(11315911-11315976)
chr6 (75-350)||(11169286-11169557)
chr6 (183-362)||(11273084-11273259)
chr6 (538-580)||(11212919-11212961)
chr6 (538-580)||(11279788-11279830)
chr6 (20-64)||(11195751-11195795)
chr6 (68-144)||(11274872-11274948)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 63 - 446
Target Start/End: Complemental strand, 11195737 - 11195354
Alignment:
Q  63 gagtattatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagtt 162  Q
    |||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||| ||||||  ||||||| ||||||| |||| ||||||| |      
T  11195737 gagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttggga 11195638  T
Q  163 atgcagtaaacnnnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagc 262  Q
    ||||||||||          |||| ||||||||     |||||||||||| |||||   |||||||| |||||||||||| |||||||||| ||||||||    
T  11195637 atgcagtaaagaataaaaagaatcattggttacaaactttactaaaatattctttcattatagtgtacgcagctgcaacaactaacatcactgggctagc 11195538  T
Q  263 ttcttctataattgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 362  Q
     |||    | |||||||||||| |         |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  11195537 ctctcagctcattgttgactttgtaaaaaaagattaaaacttcattcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataa 11195438  T
Q  363 tttgttcggtgtccttacagatgtatacgagttctgtatatatgttaagattcatgattttcctctttgcaccttgcttaatat 446  Q
    ||| |||   || |||||| ||||||| || ||||||||||||||||||||| ||  ||| |||||||||| ||||||||||||    
T  11195437 tttattcaacgtgcttacaaatgtatatgacttctgtatatatgttaagattaatcttttccctctttgcaacttgcttaatat 11195354  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 63 - 446
Target Start/End: Complemental strand, 11155290 - 11154907
Alignment:
Q  63 gagtattatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagtt 162  Q
    |||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||| ||||||  ||||||| ||||||| |||| ||||||| |      
T  11155290 gagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttggga 11155191  T
Q  163 atgcagtaaacnnnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagc 262  Q
    ||||||||||          |||| ||||  ||     |||||||||||| |||||   |||||  |||||||||||||| |||||||||||||||||||    
T  11155190 atgcagtaaagaataaaaagaatcattggaaacaaactttactaaaatattctttcattatagtccatgcagctgcaacaactaacatcaccgggctagc 11155091  T
Q  263 ttcttctataattgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 362  Q
     |||    | |||||||||||| |         |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  11155090 ctctcaactcattgttgactttgtaaaaaaagattaaaacttcattcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataa 11154991  T
Q  363 tttgttcggtgtccttacagatgtatacgagttctgtatatatgttaagattcatgattttcctctttgcaccttgcttaatat 446  Q
    |||||||   || |||| | ||||||| || |||||||||||||| ||| || ||  ||| |||||||||| ||||||||||||    
T  11154990 tttgttcaacgtgcttataaatgtatatgacttctgtatatatgtcaaggttaatcttttccctctttgcaacttgcttaatat 11154907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 336
Target Start/End: Original strand, 11246449 - 11246591
Alignment:
Q  198 ttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttg----nnnnnn 293  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||              
T  11246449 ttatcactaaaatatactttccagatagtgtttgcagctgcaacaactaacatcatcgggctagcttcttctataattgttgactttatgaagaaaaaaa 11246548  T
Q  294 ngttaaaacttcattcaaattgtattgttaaatttcaagttta 336  Q
     ||||||||||||||||||||||||||| ||||||| ||||||    
T  11246549 agttaaaacttcattcaaattgtattgtgaaatttctagttta 11246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 63 - 362
Target Start/End: Complemental strand, 11208391 - 11208096
Alignment:
Q  63 gagtattatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagtt 162  Q
    |||| ||||| |||||||||||||||||| |||||| |||||||  ||||||  ||||||||||||| ||||||| || ||||||||||||||||| |      
T  11208391 gagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatgaggggcatggtgtggaagaaggtactatggttgggc 11208292  T
Q  163 atgcagtaaacnnnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagc 262  Q
    || |||| ||          |||||||||||||| ||||||   ||||||  |||||||| |||||||||||||||||||  | ||||||||||| |||     
T  11208291 atccagtgaagaaaaagaagaatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctgcaacaggtgacatcaccgggatagt 11208192  T
Q  263 ttcttctataattgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 362  Q
    |||||||  ||||||||||||| |        |||||| |||||||||||||||| ||| ||||||||  ||||  | ||||||||||||||||| ||||    
T  11208191 ttcttctggaattgttgactttat---aaaaagttaaaccttcattcaaattgtactgtgaaatttcatattta-agcgacaatgtcaactatataataa 11208096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 11315989 - 11316048
Alignment:
Q  183 aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaaca 242  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  11315989 aatcattggttaccgttattactaaaatatactttccaggtagtgtatatagctgcaaca 11316048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 11315911 - 11315976
Alignment:
Q  81 ctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaa 146  Q
    ||||||||||| ||||||  |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  11315911 ctttcaagtgtgtttgatggaattattgtgaagaagataaaggatgaggagcatggtgtgcaagaa 11315976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 350
Target Start/End: Complemental strand, 11169557 - 11169286
Alignment:
Q  75 agcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagttatgcagtaaacn 174  Q
    ||||||||||||||||| |||||| ||||| |  | ||||  |||||||||||||  ||| || |||||||||||||||||||| |  || | || |||     
T  11169557 agcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaaggtactatggttggacatcccgtgaaca 11169458  T
Q  175 nnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataat 274  Q
            |||||||||||||| ||||||   ||||||  |||| ||| ||||||||||||| |||||  | ||||||||||  ||| ||||||| ||||    
T  11169457 aaaaaaagaatcgttggttaccattattagccaaatattgtttcgagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaat 11169358  T
Q  275 tgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtca 350  Q
      |||||||| |        |||||| ||||||||||||||||  || ||||||||| ||||  ||||||||||||    
T  11169357 gattgactttat---aaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaattta-agtgacaatgtca 11169286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 362
Target Start/End: Complemental strand, 11273259 - 11273084
Alignment:
Q  183 aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgact 282  Q
    |||| ||||||| | ||||||  |||||||  |||||||  ||||||||||| | |||||  | ||||||||||  ||| ||||||| ||||||||||||    
T  11273259 aatcattggttatcattattagcaaaatattgtttccagtcagtgtatgcagttacaacaggtgacatcaccggaatagtttcttctgtaattgttgact 11273160  T
Q  283 ttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 362  Q
    || |        |||||| ||||||||| ||||||  || ||||||||| ||||  ||||||||||||||||||| ||||    
T  11273159 ttat---aaaaagttaaaccttcattcatattgtacggtgaaatttcaaattta-agtgacaatgtcaactatataataa 11273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 580
Target Start/End: Original strand, 11212919 - 11212961
Alignment:
Q  538 catcgaaaaccacatcaaacgagcattttcaccgattactcat 580  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||    
T  11212919 catcgaaaaccacatcaaacgtgcattttaaccaattactcat 11212961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 580
Target Start/End: Original strand, 11279788 - 11279830
Alignment:
Q  538 catcgaaaaccacatcaaacgagcattttcaccgattactcat 580  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||    
T  11279788 catcgaaaaccacatcaaacgtgcattttaaccaattactcat 11279830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11195795 - 11195751
Alignment:
Q  20 aattgatttggtcttaaggtggttcgatgttaatgtggttgcgga 64  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||    
T  11195795 aattgatttggtcttcatgtggctcgatgttaacgtggttgcgga 11195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 11274948 - 11274872
Alignment:
Q  68 ttatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaag 144  Q
    ||||| |||||||||||||||||| |||||| ||||| |  | ||||  |||||||||||||  |||||| ||||||    
T  11274948 ttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacatggtgtgcaag 11274872  T

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