View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15100_low_4 (Length: 376)
Name: NF15100_low_4
Description: NF15100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15100_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 168 - 370
Target Start/End: Original strand, 42061213 - 42061415
Alignment:
| Q |
168 |
gagtgaagcactaaatttttagttaattaaaaatagatctcatatatacataaggttagtaggttatagagcatatgatataaagaatgtgaaatggaaa |
267 |
Q |
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| T |
42061213 |
gagtaaagcactaaatttttagttaattaaaaatagatctcatatatacataaggttagtaggttatagagcatatgatataaagaatgtgaaatagaaa |
42061312 |
T |
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| Q |
268 |
tagtggatatattttgaatggtggaagtgtcatgcacatagtagtttagtgtgttatgtttgtgactgacaaaggtgctatgctagtttttgtctctgcc |
367 |
Q |
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| T |
42061313 |
tagtggatatattttgaatggtggaagtgtcatgcacatagtagtgtagtgtgttatgtttgtgactgacaaaggtgctatgctagtttttgtctctgcc |
42061412 |
T |
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| Q |
368 |
ttt |
370 |
Q |
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||| |
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| T |
42061413 |
ttt |
42061415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 42061061 - 42061147
Alignment:
| Q |
16 |
gtttctgctatcaatgatgtttgacgcttcaattcttttacatgttgtataacttctgctagcaatgatgctttgtctgtctataat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42061061 |
gtttctgctatcaatgatgtttgacgcttcaattcttttacatgttgtataacttctgctagcaatgatgctttgtctgtctataat |
42061147 |
T |
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