View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15101_high_4 (Length: 551)

Name: NF15101_high_4
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15101_high_4
NF15101_high_4
[»] chr1 (4 HSPs)
chr1 (17-146)||(48977562-48977691)
chr1 (287-401)||(48977314-48977429)
chr1 (140-240)||(48977438-48977539)
chr1 (481-551)||(48976748-48976814)
[»] chr4 (9 HSPs)
chr4 (171-289)||(35130602-35130720)
chr4 (169-304)||(31351649-31351784)
chr4 (171-289)||(13538246-13538364)
chr4 (178-289)||(49479462-49479573)
chr4 (173-289)||(42657503-42657619)
chr4 (188-295)||(9460178-9460284)
chr4 (172-235)||(55967780-55967843)
chr4 (173-279)||(38415496-38415602)
chr4 (171-279)||(35010384-35010492)
[»] chr2 (3 HSPs)
chr2 (203-289)||(37123587-37123673)
chr2 (166-304)||(9198907-9199044)
chr2 (167-304)||(31068869-31069006)
[»] chr3 (8 HSPs)
chr3 (168-302)||(6757233-6757367)
chr3 (167-267)||(55009517-55009617)
chr3 (203-289)||(38745284-38745370)
chr3 (203-289)||(41259944-41260030)
chr3 (167-247)||(32594559-32594639)
chr3 (225-295)||(51829542-51829612)
chr3 (168-277)||(6459197-6459306)
chr3 (173-289)||(54240605-54240721)
[»] chr8 (3 HSPs)
chr8 (225-289)||(13147735-13147799)
chr8 (178-304)||(28300093-28300219)
chr8 (171-304)||(12959706-12959839)
[»] chr6 (6 HSPs)
chr6 (172-291)||(24618950-24619068)
chr6 (171-279)||(6922635-6922743)
chr6 (168-279)||(12606646-12606757)
chr6 (181-289)||(7326322-7326430)
chr6 (480-515)||(230756-230791)
chr6 (208-236)||(12232167-12232195)
[»] chr7 (6 HSPs)
chr7 (171-289)||(9667222-9667340)
chr7 (188-289)||(25091177-25091277)
chr7 (218-279)||(45967362-45967423)
chr7 (184-266)||(13054607-13054689)
chr7 (218-256)||(36114325-36114363)
chr7 (173-289)||(27227255-27227371)
[»] scaffold0166 (1 HSPs)
scaffold0166 (180-302)||(35865-35987)
[»] chr5 (4 HSPs)
chr5 (180-302)||(24793482-24793604)
chr5 (166-304)||(30327649-30327787)
chr5 (203-304)||(15409184-15409284)
chr5 (168-289)||(20706501-20706622)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 48977691 - 48977562
Alignment:
Q  17 aagggaagggtgccaacattagtgaggtcattacaaagattatgttcatatttggggttggtttatttggacggaaggaagcataccaccgggatgcaca 116  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48977691 aagggaagggtgccaacattagtaaggtcattacaaagattaggttcctatttggggttggtttatttggacggaaggaagcataccaccaggatgcaca 48977592  T
Q  117 ttttcatattagtgtggtcaccttttagtg 146  Q
    |||||||||| |||||||||||||||||||    
T  48977591 ttttcatattggtgtggtcaccttttagtg 48977562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 48977429 - 48977314
Alignment:
Q  287 cttcaccaaaataaaaaatggaaggtatccctttaatacaattttgcttnnnnnnnnnnn-gataaaatatttgtaagacaatgaatatatagttttggt 385  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  48977429 cttcaccaaaataaaaaatggaaggtgttcctttaatgcaattttgcttaaaaaagaaaaagataaaatatttgtaagacaatgaatatatagttttggt 48977330  T
Q  386 gggtcaagtaatgttc 401  Q
    ||||||||||||||||    
T  48977329 gggtcaagtaatgttc 48977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 48977539 - 48977438
Alignment:
Q  140 tttagtgtatcttaattgtgttgtat-ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaa 238  Q
    |||||||||||||||||||||||||| |||| |||||| ||||| | |||||||| ||| | ||||||||||||| ||||||||||||||||||||||||    
T  48977539 tttagtgtatcttaattgtgttgtatgttgtcccgtaactgtagcttaattggtatctatccaagataatttgtgcggtggtcggggttcgaaccccaaa 48977440  T
Q  239 tt 240  Q
    ||    
T  48977439 tt 48977438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 48976814 - 48976748
Alignment:
Q  481 tggtttccctctctctaaatcccttataccctaaatatataaattggtttaccaaatcaattttttcgatc 551  Q
    ||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||| |||||||    
T  48976814 tggtttccctctctctaaatcccttataccctaa----aaaaattggtttaccaaatcaatttgttcgatc 48976748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 35130720 - 35130602
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| ||||||||| ||||||||||||  ||||||||||||  | || |||||||||||||||  ||||| |||||||||||| || |||||||| ||    
T  35130720 ccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaa 35130621  T
Q  271 tgtagccaccagactactt 289  Q
    | |||||||  ||||||||    
T  35130620 tctagccacatgactactt 35130602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 304
Target Start/End: Complemental strand, 31351784 - 31351649
Alignment:
Q  169 ttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtc 268  Q
    |||||||| ||||| ||| ||||||||||||  ||||||||||||  | ||||||||||||||| ||  ||||| || |||| |||| ||||| |||||     
T  31351784 ttccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtg 31351685  T
Q  269 aatgtagccaccagactacttcaccaaaataaaaaa 304  Q
    ||| ||||||| ||||||||| | ||||| ||||||    
T  31351684 aatctagccactagactacttgatcaaaaaaaaaaa 31351649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 13538364 - 13538246
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| ||||| ||| |||||||||| |  ||||||||||||| | ||  || |||||||||||||||||| ||||||| || | ||||||||||| ||    
T  13538364 ccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaa 13538265  T
Q  271 tgtagccaccagactactt 289  Q
    | ||||||| |||||||||    
T  13538264 tctagccactagactactt 13538246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 49479462 - 49479573
Alignment:
Q  178 tgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagcc 277  Q
    ||||||||| |||||||||| |  | ||||||| ||| | ||| |||||||||| ||| ||||||  |||||| |||| ||||||||||| ||| || ||    
T  49479462 tgtagttcagttggtagctatcagaaataatttatgtaggggtaggggttcgaatcccgaatttccaacttctccacacataatgtgtgtgaatctaacc 49479561  T
Q  278 accagactactt 289  Q
    || |||||||||    
T  49479562 actagactactt 49479573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 42657503 - 42657619
Alignment:
Q  173 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 272  Q
    |||| ||||| ||| |||||||||| |  ||||||||| | | | |||||| |||||||||||| |||   |||||||||||| ||||||||||| |||     
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaaccccacattctccacttcttcacacataatgtgtgtgaatt 42657602  T
Q  273 tagccaccagactactt 289  Q
    || |||| | |||||||    
T  42657603 taaccactaaactactt 42657619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 9460178 - 9460284
Alignment:
Q  188 ttggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactac 287  Q
    |||||||||| |  ||||||||||||| | ||||||||||| || |||| ||| | || |||| |||| ||||||||||| ||| ||||||| | |||||    
T  9460178 ttggtagctatcagagataatttgtgtag-ggtcggggttcaaatcccatattccccatttctccacacataatgtgtgtgaatatagccactaaactac 9460276  T
Q  288 ttcaccaa 295  Q
    || |||||    
T  9460277 ttgaccaa 9460284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 55967780 - 55967843
Alignment:
Q  172 cgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaacccc 235  Q
    ||||| ||||| |||||||||| ||||| | |||||||||||| | || |||||||||||||||    
T  55967780 cgtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaacccc 55967843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 38415602 - 38415496
Alignment:
Q  173 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 272  Q
    |||| ||||| ||| |||||||||| | | |||||||||||  | |||| || |||||||||||||||   || ||||||| | ||||||||||| |||     
T  38415602 gtaagtgtagctcagttggtagctatcaaggataatttgtgcagaggtcaggattcgaaccccaaattctccatttcttcatacataatgtgtgtgaatc 38415503  T
Q  273 tagccac 279  Q
    |||||||    
T  38415502 tagccac 38415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 35010492 - 35010384
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| | ||| ||| |||||||||| |  ||||||||||||  |  |||||||||||||| ||  ||||| ||||||| |||| ||||||||| | ||    
T  35010492 ccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgtgtatgaa 35010393  T
Q  271 tgtagccac 279  Q
    | |||||||    
T  35010392 tctagccac 35010384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 289
Target Start/End: Original strand, 37123587 - 37123673
Alignment:
Q  203 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 289  Q
    |||||||||||| | | ||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| |||||||||    
T  37123587 gataatttgtgtagggttcgggattcgaaccccaaatttctcacttctccacacataatgtgtgtgaatctagccactagactactt 37123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 9199044 - 9198907
Alignment:
Q  166 ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtc-ggggttcgaaccccaaatttctcacttcttcacatataatgtg 264  Q
    |||| |||||| ||||| ||| ||||||||||||  ||||||||||||  | || | |||||||||||| | |||||| ||||||| |||| ||||||||    
T  9199044 ttgtcccgtaagtgtagctcagttggtagctaccagagataatttgtgcagcgggctggggttcgaacctcgaatttcccacttctccacacataatgtg 9198945  T
Q  265 tgtcaatgtagccaccagactacttcaccaaaataaaaaa 304  Q
    ||  ||| ||||||| || |||||| ||||||| ||||||    
T  9198944 tg--aatttagccacgaggctacttgaccaaaaaaaaaaa 9198907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 31069006 - 31068869
Alignment:
Q  167 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 266  Q
    |||||||||| ||||| ||| |||||||||| |   |||||||||||| | |||||| ||| |||| ||  ||| | ||||||| ||||  |||||||||    
T  31069006 tgttccgtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccacttctccacacttaatgtgtg 31068907  T
Q  267 tcaatgtagccaccagactacttcaccaaaataaaaaa 304  Q
    | ||| || |||| |||||| || || |||| ||||||    
T  31068906 tgaatctaaccactagactatttgacaaaaaaaaaaaa 31068869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 302
Target Start/End: Original strand, 6757233 - 6757367
Alignment:
Q  168 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 267  Q
    ||||||||||||||| |||| ||||||||| | | |||||||||||  ||||| | |||| |||||| | ||||||||||| | |||| |||||||||||    
T  6757233 gttccgtaaatgtagctcaactggtagctatcaaggataatttgtgcagtggttgaggtttgaaccctagatttctcacttttccacacataatgtgtgt 6757332  T
Q  268 caatgtagccaccagactacttcaccaaaataaaa 302  Q
     ||| ||||||| || ||| || ||||||| ||||    
T  6757333 aaatctagccactaggctatttaaccaaaaaaaaa 6757367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 55009517 - 55009617
Alignment:
Q  167 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 266  Q
    |||||||||| ||||| ||||||||||||||     |||||||||||| | |  |||||||||||||||  ||||||||||||| || | ||||||||||    
T  55009517 tgttccgtaagtgtagctcaattggtagctattagggataatttgtgtagagaccggggttcgaaccccggatttctcacttctccatacataatgtgtg 55009616  T
Q  267 t 267  Q
    |    
T  55009617 t 55009617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 38745370 - 38745284
Alignment:
Q  203 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 289  Q
    |||||||||||  | ||||||| |||||||||| |||| | ||||||| |||| | ||||||||| ||| ||||||| |||||||||    
T  38745370 gataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacacaaaatgtgtgtgaatctagccactagactactt 38745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 41260030 - 41259944
Alignment:
Q  203 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 289  Q
    |||||||||||| | || |||||||||| |||| |||| | ||||||| |||| ||||||||||| ||| ||||||| || ||||||    
T  41260030 gataatttgtgtaggggccggggttcgacccccgaattccccacttctccacacataatgtgtgtgaatctagccactaggctactt 41259944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 32594559 - 32594639
Alignment:
Q  167 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcact 247  Q
    |||||||||| ||||||||| ||||||| ||      ||||||||||| |||||||||||||||||||| |||||| ||||    
T  32594559 tgttccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaaccccgaatttcccact 32594639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 51829612 - 51829542
Alignment:
Q  225 gttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactacttcaccaa 295  Q
    |||||||||||| ||| ||||||||| |||| ||||||| ||| ||| ||||||| | ||||||| |||||    
T  51829612 gttcgaaccccagattcctcacttctccacacataatgtatgtgaatctagccactatactacttgaccaa 51829542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 6459306 - 6459197
Alignment:
Q  168 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 267  Q
    ||||||||||||||  |||| | ||||||||  | |||||||||||   |||| |||||| |||||||| |||| |||||| | || | |||||||||||    
T  6459306 gttccgtaaatgtaactcaactagtagctactaaggataatttgtgcaatggttggggtttgaaccccagatttttcacttttccatacataatgtgtgt 6459207  T
Q  268 caatgtagcc 277  Q
     ||| |||||    
T  6459206 aaatctagcc 6459197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 54240605 - 54240721
Alignment:
Q  173 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 272  Q
    |||||||||| ||| |||| ||||||| | || ||| ||||  | |||||||||||||||| |  ||||  ||||||| |||  ||||||||||| |||     
T  54240605 gtaaatgtagctcagttggcagctaccaaggacaatatgtgcaggggtcggggttcgaacctcggattttccacttctccacgcataatgtgtgtgaatc 54240704  T
Q  273 tagccaccagactactt 289  Q
    || |||| |||||||||    
T  54240705 taaccactagactactt 54240721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 13147799 - 13147735
Alignment:
Q  225 gttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 289  Q
    |||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||||    
T  13147799 gttcgaaccccaaatttcacacttcttcacacataatgtgtgtgaatctagccactagactactt 13147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 28300093 - 28300219
Alignment:
Q  178 tgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagcc 277  Q
    ||||| ||| |||||||||||| | |||||||||||  | || |||||||||||||||  ||| | ||||||| || | ||||||||||| ||| |||||    
T  28300093 tgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagcc 28300192  T
Q  278 accagactacttcaccaaaataaaaaa 304  Q
    || || |||||| ||||||| ||||||    
T  28300193 acaaggctacttgaccaaaaaaaaaaa 28300219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 12959706 - 12959839
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| ||||| ||| |||||||||| |   ||||| |||||  | ||| ||||||||||||||| ||| | ||||| ||| |||||||||||||| ||    
T  12959706 ccgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccacttattcgcatataatgtgtgtgaa 12959805  T
Q  271 tgtagccaccagactacttcaccaaaataaaaaa 304  Q
    | ||||||| |  |||||| || |||| ||||||    
T  12959806 tctagccacgaagctacttgacaaaaacaaaaaa 12959839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 291
Target Start/End: Complemental strand, 24619068 - 24618950
Alignment:
Q  172 cgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaat 271  Q
    ||||||||||| ||| |||||||||||  |||||||||| ||  |||| ||| ||||||||||| ||||||  |||||| || ||||||||||||| ||     
T  24619068 cgtaaatgtagctcagttggtagctactaaagataatttatgcagtggccggagttcgaacccc-aatttcctacttctccatatataatgtgtgtgaac 24618970  T
Q  272 gtagccaccagactacttca 291  Q
    |||||||| | |||||||||    
T  24618969 gtagccactatactacttca 24618950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 6922743 - 6922635
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| ||||||||| ||||||||||||    ||||||||||  | ||||||||||| ||| ||| ||| | ||||||| |||||||||||||||| ||    
T  6922743 ccgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctccacatataatgtgtgtgaa 6922644  T
Q  271 tgtagccac 279  Q
    | |||||||    
T  6922643 tctagccac 6922635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 12606646 - 12606757
Alignment:
Q  168 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 267  Q
    |||| |||| ||||| ||| |||||||||||    |||||||||||| |   ||| ||||||||||||| ||| | ||||||||||||||||||||||||    
T  12606646 gttctgtaagtgtagctcagttggtagctactagggataatttgtgtaggaatcgaggttcgaaccccagattccccacttcttcacatataatgtgtgt 12606745  T
Q  268 caatgtagccac 279  Q
     ||| |||||||    
T  12606746 gaatctagccac 12606757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 7326430 - 7326322
Alignment:
Q  181 agttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccacc 280  Q
    |||||| ||||||||||||   ||||||||| |  | ||||||| ||||||||| | ||| | ||||||| |||| ||||||||||| ||| |||||||     
T  7326430 agttcagttggtagctaccagggataatttgagcaggggtcgggtttcgaaccctagattccccacttctccacacataatgtgtgtgaatttagccact 7326331  T
Q  281 agactactt 289  Q
    |||||||||    
T  7326330 agactactt 7326322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 515
Target Start/End: Complemental strand, 230791 - 230756
Alignment:
Q  480 ttggtttccctctctctaaatcccttataccctaaa 515  Q
    |||||||||||||||||||||||||||||| |||||    
T  230791 ttggtttccctctctctaaatcccttatactctaaa 230756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 12232167 - 12232195
Alignment:
Q  208 tttgtgtggtggtcggggttcgaacccca 236  Q
    |||||||||||||||||||||||||||||    
T  12232167 tttgtgtggtggtcggggttcgaacccca 12232195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 9667340 - 9667222
Alignment:
Q  171 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 270  Q
    |||||| ||||| ||| |||||||||| |  ||||||||||||| | ||  || |||||||||||||||||| ||||||| || | ||||||||||| ||    
T  9667340 ccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaa 9667241  T
Q  271 tgtagccaccagactactt 289  Q
    |  |||||| |||||||||    
T  9667240 tccagccactagactactt 9667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 25091177 - 25091277
Alignment:
Q  188 ttggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactac 287  Q
    ||||||||||||   |||||||||||  | ||||| ||||| ||| ||| |||| ||||||||||||| ||||||||||| ||| ||||||| |||||||    
T  25091177 ttggtagctaccagggataatttgtgcaggggtcgaggttcaaactccagattt-tcacttcttcacacataatgtgtgtgaatctagccactagactac 25091275  T
Q  288 tt 289  Q
    ||    
T  25091276 tt 25091277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 45967423 - 45967362
Alignment:
Q  218 ggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 279  Q
    |||||||||||||||||| |||| ||||||| |||||| ||||||||||| ||| |||||||    
T  45967423 ggtcggggttcgaaccccgaattcctcactttttcacacataatgtgtgtgaatctagccac 45967362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 13054607 - 13054689
Alignment:
Q  184 tcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 266  Q
    ||||||||||||||||   || ||| ||||  | || |||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  13054607 tcaattggtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtg 13054689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 36114363 - 36114325
Alignment:
Q  218 ggtcggggttcgaaccccaaatttctcacttcttcacat 256  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  36114363 ggtcggggttcgaaccccaaatatctcacttctccacat 36114325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 289
Target Start/End: Complemental strand, 27227371 - 27227255
Alignment:
Q  173 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 272  Q
    |||| ||||| ||| |||||| |||||  ||||||||||| | | ||| | | |||||| |||| ||| | ||||||| |||| ||||||||| | |||     
T  27227371 gtaagtgtagctcagttggtacctaccagagataatttgtataggggttgtgtttcgaatcccagattccccacttctccacacataatgtgtttgaatc 27227272  T
Q  273 tagccaccagactactt 289  Q
    ||||||| |||||||||    
T  27227271 tagccactagactactt 27227255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 35865 - 35987
Alignment:
Q  180 tagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 279  Q
    ||||||| |||||||||| |  ||||||||||||  | ||||||||| ||||||||| ||||| || ||||  ||| ||||||| ||| ||| |||||||    
T  35865 tagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccac 35964  T
Q  280 cagactacttcaccaaaataaaa 302  Q
     ||||||||| || |||| ||||    
T  35965 tagactacttgacaaaaaaaaaa 35987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 24793482 - 24793604
Alignment:
Q  180 tagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 279  Q
    ||||||| |||||||||| |  ||||||||||||  | ||||||||| ||||||||| ||||| || ||||  ||| ||||||| ||| ||| |||||||    
T  24793482 tagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccac 24793581  T
Q  280 cagactacttcaccaaaataaaa 302  Q
     ||||||||| || |||| ||||    
T  24793582 tagactacttgacaaaaaaaaaa 24793604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 304
Target Start/End: Original strand, 30327649 - 30327787
Alignment:
Q  166 ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgt 265  Q
    ||||||| ||| ||||| ||| |||||||||| |  ||||||||| ||  | || ||||||||||||||| ||||   ||||||| |||| ||||| |||    
T  30327649 ttgttccataagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacacataatatgt 30327748  T
Q  266 gtcaatgtagccaccagactacttcaccaaaataaaaaa 304  Q
    || ||| ||||||| | ||||||| | ||||| ||||||    
T  30327749 gtgaatctagccactaaactacttgatcaaaaaaaaaaa 30327787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 15409184 - 15409284
Alignment:
Q  203 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactacttcaccaaaataaaa 302  Q
    |||||||||||| | || ||||||| ||| |||| ||| | |||||||| ||| ||||||||||| ||| ||||||| ||||||||| || |||| ||||    
T  15409184 gataatttgtgtag-ggccggggtttgaatcccagattccccacttctttacacataatgtgtgtgaatttagccactagactacttgacaaaaaaaaaa 15409282  T
Q  303 aa 304  Q
    ||    
T  15409283 aa 15409284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 20706501 - 20706622
Alignment:
Q  168 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 267  Q
    |||| |||||||||| ||| |||||||||||| | |||||||||||  | ||||  |||| |||||  | ||||  ||||||| ||||  ||||||||||    
T  20706501 gttctgtaaatgtagctcagttggtagctaccaacgataatttgtgcagaggtcaaggtttgaaccttagattttccacttctccacacgtaatgtgtgt 20706600  T
Q  268 caatgtagccaccagactactt 289  Q
     ||| || ||||||| ||||||    
T  20706601 gaatctaaccaccagcctactt 20706622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University