View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_high_5 (Length: 524)
Name: NF15101_high_5
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 506
Target Start/End: Complemental strand, 4764905 - 4764402
Alignment:
| Q |
15 |
cataggagaacataagagagataataacaccttttgttcttgtaatgaaaatgtatatgatgcca--------------ggatcacgggatcataacatg |
100 |
Q |
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| T |
4764905 |
cataggagaacataagagagataataacaccttttgttcttgtaatgaaa-tgtatatgatgccaattggaaaagaaagggatcacgggatcataacatg |
4764807 |
T |
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| Q |
101 |
atccgaggnnnnnnngaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacagcagaatc |
200 |
Q |
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| T |
4764806 |
atccgaggaagaaaagaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacaacagaatc |
4764707 |
T |
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| Q |
201 |
cctcacaagggagcggcgacactaaccctaggagcggcggannnnnnnccagtcatataannnnnnnnataaaattcaaatcatttatttcttaatcgtc |
300 |
Q |
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| T |
4764706 |
cctcacaagggagtggcgacgctaaccctaggagcggcggctttttttccagtgatataattttttt-ataaaattcaaatcatttatttcttaatcgtc |
4764608 |
T |
|
| Q |
301 |
cttttatctagaagtgtttgagtggcattttgaatatgttaggttttcccactccccagtttaccaatattattttgcatgccaaacaattttgtggtct |
400 |
Q |
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| T |
4764607 |
cttttatctagaagtgtttgagtggcattttgaatatgttaggttttcccactccccagtttaccaatattattttgcatgccaaacaattttgtggtct |
4764508 |
T |
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| Q |
401 |
tcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctgtatagttgcaa |
500 |
Q |
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| T |
4764507 |
tcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctgtatagttgcaa |
4764408 |
T |
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| Q |
501 |
cgatat |
506 |
Q |
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|||||| |
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| T |
4764407 |
cgatat |
4764402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 397 - 505
Target Start/End: Complemental strand, 4670398 - 4670290
Alignment:
| Q |
397 |
gtcttcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctgtatagtt |
496 |
Q |
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| T |
4670398 |
gtcttcattcttttataaaagaatcccgtaaatgctttcatgcaatatgattgctttctctggactagtttgattgatcgaaagaatatgctctatagtt |
4670299 |
T |
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| Q |
497 |
gcaacgata |
505 |
Q |
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|||| |||| |
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| T |
4670298 |
gcaaagata |
4670290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 4670441 - 4670407
Alignment:
| Q |
283 |
atttatttcttaatcgtccttttatctagaagtgt |
317 |
Q |
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| T |
4670441 |
atttatttcttaattgtccttttatctagaagtgt |
4670407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 19061253 - 19061338
Alignment:
| Q |
156 |
aaaacgttaagaggagcagatatctcaccaaaccacagcagaatccctcacaaggg-agcggcgacactaaccctaggagcggcgg |
240 |
Q |
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|||||||| || |||| ||| |||||| | ||| || ||| ||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
19061253 |
aaaacgttcaggggagaagaaatctcaacgaacgacggcaaaatccctcacaagggtagcggcggcaagaaccctaggagcggcgg |
19061338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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