View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_low_1 (Length: 855)
Name: NF15101_low_1
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_1 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold1463 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 687; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 20 - 855
Target Start/End: Original strand, 17832136 - 17832977
Alignment:
| Q |
20 |
attaactctgtcattccctcattaacttatcaaagtgatgattttgttgtatttgatgagtttgtacaaacgaatatgtcgaagctgtaactgtggaaag |
119 |
Q |
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| T |
17832136 |
attaactctgtcattccctcattaactgatcaaagtgatgaatttgttgtatttgatgagtctgtacaaacgaatatgtcgaagctgtaactgtggaaag |
17832235 |
T |
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| Q |
120 |
gtgctggatttgttgatgtgttagttgaaggatgttgtttgtcattagttaaccgttttaatttagaatggattctgtcaaaatgcattgcccattcaag |
219 |
Q |
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| T |
17832236 |
gtgctggatttgttgatgtgttagttgaaggatgttgtttgtcattagttaaccgttttaatttagaatggattctgtcaaaatgcattgcccattcaag |
17832335 |
T |
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| Q |
220 |
agtttgaaattactgtgatcaattagttgggctatatttaaaaatgaataatgagatttgattactagctgcagcattacttctaattaactcctagagc |
319 |
Q |
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| T |
17832336 |
agtttgaaattactgtgatcaattagttgggctatatttgaaaatgaataatgagatttgattactagctgcaggattacttctaattaactcctagagc |
17832435 |
T |
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| Q |
320 |
tccgtatgaagtgnnnnnnnnnnn-----acgcatatgaagtgttaaatattatgttattagtttgtatgctattagcaaacccattttatcattacaac |
414 |
Q |
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| T |
17832436 |
tccctatgaagtgttttttttttttttttacgcatatgaagtgttaaatattatgttattagtttgtatgctattagcaaacccattttatcattacaac |
17832535 |
T |
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| Q |
415 |
attttcaagttaataataaaatgtatagatttccattattggtgatggctttgataaatttataatattatgtttcctaatggacatgtataaataattg |
514 |
Q |
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| T |
17832536 |
attttcaagttaataataaaatgtatagatttccattattggtgatggctgtgataaatttataatattatgcttcctaatggacatgtataaataattg |
17832635 |
T |
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| Q |
515 |
tctataatttgaagnnnnnnnnnnnnnn-ggaaatctgatgtggtttcctgggtattttcagcatgtaaactgtttgcagcaaagttttctgatggtaca |
613 |
Q |
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| T |
17832636 |
tctataatttgaagtttttctctttttttggaaatctgatgtggtttcctgggtattttcagcatgtaaactgtttgcagcaaagttttctgatggtaca |
17832735 |
T |
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| Q |
614 |
atacttcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctttcatagtttctattaaaactattttcatactttt |
713 |
Q |
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| T |
17832736 |
atactgcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctttcatagtttctattaaaactattttcatactttt |
17832835 |
T |
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| Q |
714 |
tgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactcc |
813 |
Q |
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| T |
17832836 |
tgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgtgattacaatgaagtattggagttctttacatttaagactca |
17832935 |
T |
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| Q |
814 |
ctgtttgatttagtatttatacaaattggatgtatgttgcct |
855 |
Q |
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| T |
17832936 |
ctatttgatttagtatttatacaaattggatgtatgttgcct |
17832977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 824
Target Start/End: Original strand, 7391030 - 7391119
Alignment:
| Q |
735 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
824 |
Q |
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| T |
7391030 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
7391119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 824
Target Start/End: Complemental strand, 19586082 - 19585993
Alignment:
| Q |
735 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
824 |
Q |
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| T |
19586082 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
19585993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 735 - 824
Target Start/End: Original strand, 440 - 529
Alignment:
| Q |
735 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
824 |
Q |
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| T |
440 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacaattaactattgaagatttttaaatttaagactccctgtttcattt |
529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 8746 - 8692
Alignment:
| Q |
117 |
aaggtgctggatttgttgatgtgttagttgaaggatgttgtttgtcattagttaa |
171 |
Q |
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| T |
8746 |
aaggtgatggatttgttgatccgttagtggaaggatgttgtttgtcattagttaa |
8692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 824
Target Start/End: Complemental strand, 11657815 - 11657726
Alignment:
| Q |
735 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
824 |
Q |
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| T |
11657815 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactacctgtttcattt |
11657726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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