View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_low_11 (Length: 330)
Name: NF15101_low_11
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 27143649 - 27143348
Alignment:
| Q |
19 |
ataatgtcctacaaaaactttatgaaatgatccatggttggaaatgttcacaagatgttgctaaataacccttcactaacacgaatacacgatcatggaa |
118 |
Q |
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| T |
27143649 |
ataatgtcctacaaaaactttatgaaatgatccatggttggaaatgttcacaagatgttgctaaataacccttcactaacacgaatacacgatcatggaa |
27143550 |
T |
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| Q |
119 |
cacatccaattttcgttttggatcagtggggtttgtttgataggcaatttggtaggactgatactgacgaggcagatccagaggggagaattccactttg |
218 |
Q |
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| T |
27143549 |
cacatccaattttcgttttggatcagtggggtttgttcgataggcaatttggtaggactgatactgacgaggcagatccagaggggagaattccactttg |
27143450 |
T |
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| Q |
219 |
ggagaaagcaagtgttcaggaaatgaaagataaattttctgcagtaggctttggtcctcgccaggtacttcccatattttatcactatttttgctcattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27143449 |
ggagaaagcaagtgttcaggaaatgaaagataaattttctgcagtaggctttggtcctcgccaggtacttcccatattttatcactatttttgctcattc |
27143350 |
T |
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| Q |
319 |
tt |
320 |
Q |
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| T |
27143349 |
tt |
27143348 |
T |
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