View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_low_13 (Length: 317)
Name: NF15101_low_13
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 14250407 - 14250109
Alignment:
| Q |
18 |
aaaagtgtgctgttttgatttctcttttggatctcttaacacggatttagaaattaacagaaactgaaaaacagtcgaacttaccactttaaggggagga |
117 |
Q |
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| T |
14250407 |
aaaagtgtgccgttttgatttctcttttggatctcttaacacg-atttaaaaatcaacagaaactgaaaaacaatcgaacttaccactttaaggggagga |
14250309 |
T |
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| Q |
118 |
atgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacgcgtgtttttaccgactgcaagaagaaacattaaa |
217 |
Q |
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| T |
14250308 |
atgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacgcgtgtttttaccgactgcaagaagaaacattaaa |
14250209 |
T |
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| Q |
218 |
agtgttacactatacctttttcatttcctccacttcattcatatttttcaagtagttaggagataagaatactcacttggtgtcccaaagaaaggatgac |
317 |
Q |
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| T |
14250208 |
agtgttacactatacctttttcatttcctccacttcattcatatttttcaagtagttaggagataagaatactcacttggtgtcccaaagaaaggatgac |
14250109 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 4988168 - 4988278
Alignment:
| Q |
95 |
aacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacgcgtgtttttac |
194 |
Q |
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||||||| | |||||| ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||| || || || || |
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| T |
4988168 |
aacttactattttaagaggagggatgttctcagggattgacagcattaggctttcattccaaacaggatttaaattgttctttataacacgcgtcttcac |
4988267 |
T |
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| Q |
195 |
cgactgcaaga |
205 |
Q |
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| T |
4988268 |
cgactgcaaga |
4988278 |
T |
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