View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15101_low_15 (Length: 276)

Name: NF15101_low_15
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15101_low_15
NF15101_low_15
[»] chr5 (10 HSPs)
chr5 (18-260)||(8529537-8529779)
chr5 (18-255)||(8536106-8536343)
chr5 (19-256)||(1599565-1599802)
chr5 (19-256)||(9073997-9074240)
chr5 (110-259)||(8547439-8547588)
chr5 (138-251)||(2844435-2844548)
chr5 (138-251)||(2873878-2873991)
chr5 (138-232)||(2856268-2856362)
chr5 (134-257)||(8644833-8644956)
chr5 (138-251)||(2904384-2904497)
[»] chr4 (1 HSPs)
chr4 (18-260)||(9443698-9443940)
[»] chr7 (2 HSPs)
chr7 (21-257)||(48361119-48361355)
chr7 (145-259)||(35780429-35780544)
[»] chr6 (1 HSPs)
chr6 (109-262)||(16716980-16717133)
[»] scaffold0627 (1 HSPs)
scaffold0627 (110-251)||(5293-5434)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 8529779 - 8529537
Alignment:
Q  18 cagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattg 117  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8529779 cagatcaataatgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagtgataggggtagacagagtctttatattg 8529680  T
Q  118 cttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8529679 cttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaa 8529580  T
Q  218 cccagtcacgggggagttcatatgacttcctgaatctactaca 260  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  8529579 cccagtcacgggggagttcataagacttcctgaatctactaca 8529537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 8536343 - 8536106
Alignment:
Q  18 cagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattg 117  Q
    |||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  8536343 cagatcaataatgaatccaagcgaccttttcgtgctgcgagattagtttcagggaaaaacgacgagaacagttatacgggtagacaaagtctttatattg 8536244  T
Q  118 cttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaa 217  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8536243 cttgcaaaagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaa 8536144  T
Q  218 cccagtcacgggggagttcatatgacttcctgaatcta 255  Q
    ||||||||| |||||||| ||| |||||||||||||||    
T  8536143 cccagtcactggggagtttataagacttcctgaatcta 8536106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 1599565 - 1599802
Alignment:
Q  19 agatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgc 118  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||| |||||||| || ||||||||| ||| ||||||||| ||||||||||||||    
T  1599565 agatcaataatgaatccaagcgcccttttcgtgctgcgagattagtttcggggaaaaaggatgagaacagtgatacgggtagacaaagtctttatattgc 1599664  T
Q  119 ttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaac 218  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  1599665 ttgcaacagtgattttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaac 1599764  T
Q  219 ccagtcacgggggagttcatatgacttcctgaatctac 256  Q
    ||| |||| |||||||||||| ||||||||||||||||    
T  1599765 ccaatcactggggagttcataagacttcctgaatctac 1599802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 9073997 - 9074240
Alignment:
Q  19 agatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtaga-cagagtctt-----ta 112  Q
    |||||| |||||||| |||   |||| |||||||||| ||||||||||| ||||||||| | ||||||| | |||||| |||| || |   ||     ||    
T  9073997 agatcagtaatgaattcaatcgccctgttcgtgctgcaagattagtttcggggaaaaacaatgagaacattgatagggatagaacaaaccgttatagtta 9074096  T
Q  113 tattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatc 212  Q
    || ||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||   |||||||| | |||||||    
T  9074097 tactgcttgcaacaaatattatgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatc 9074196  T
Q  213 tgcaacccagtcacgggggagttcatatgacttcctgaatctac 256  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||    
T  9074197 tgcaacccagtcacaggggagttcataagacttcctgaagctac 9074240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 8547439 - 8547588
Alignment:
Q  110 ttatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtg 209  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| ||||||    
T  8547439 ttatattgcttgcaacagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtg 8547538  T
Q  210 atctgcaacccagtcacgggggagttcatatgacttcctgaatctactac 259  Q
    |||||||| ||| |||| |||||||||||| |||||| |||| |||||||    
T  8547539 atctgcaatccaatcacaggggagttcataagacttcttgaagctactac 8547588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
Q  138 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 237  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2844435 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2844534  T
Q  238 tatgacttcctgaa 251  Q
     |  ||||||||||    
T  2844535 caatacttcctgaa 2844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 2873878 - 2873991
Alignment:
Q  138 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 237  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2873878 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2873977  T
Q  238 tatgacttcctgaa 251  Q
     |  ||||||||||    
T  2873978 caatacttcctgaa 2873991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 2856268 - 2856362
Alignment:
Q  138 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacggggga 232  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| ||||    
T  2856268 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgaggga 2856362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 8644956 - 8644833
Alignment:
Q  134 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 233  Q
    ||||||||||| | ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| |||||||| ||||||    
T  8644956 tgataagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggag 8644857  T
Q  234 ttcatatgacttcctgaatctact 257  Q
    || ||| |||||||| || |||||    
T  8644856 tttataagacttcctaaagctact 8644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 2904384 - 2904497
Alignment:
Q  138 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 237  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  |||||   |||| ||| |||| ||| ||||||||||| ||| |||| ||||    
T  2904384 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca 2904483  T
Q  238 tatgacttcctgaa 251  Q
     |  ||||||||||    
T  2904484 caatacttcctgaa 2904497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 9443940 - 9443698
Alignment:
Q  18 cagatcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattg 117  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  9443940 cagatcaatattgaatccaagcgcccttttcgtgctgccagattagtttcagggaaaaacaacgacaacagtgataggggtagacagagtctttatattg 9443841  T
Q  118 cttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaa 217  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9443840 attgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaa 9443741  T
Q  218 cccagtcacgggggagttcatatgacttcctgaatctactaca 260  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  9443740 cccagtcacgggggagttcataagacttcctgaatctactaca 9443698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 48361119 - 48361355
Alignment:
Q  21 atcaataatgaatccaagaacccttttcgtgctgccagattagtttcagggaaaaacgacgagaacagttataggggtagacagagtctttatattgctt 120  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||||||||| ||||||||||||||||    
T  48361119 atcaataatgaatccaagcacccttttcgtgctgcaagattagtttcgggaaaaaatgatgagaacagtgataggggtagacaaagtctttatattgctt 48361218  T
Q  121 gcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaaccc 220  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  48361219 gcaacagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaaccc 48361318  T
Q  221 agtcacgggggagttcatatgacttcctgaatctact 257  Q
    |||||| |||||||||||| |||||||||||||||||    
T  48361319 agtcacaggggagttcataagacttcctgaatctact 48361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 35780544 - 35780429
Alignment:
Q  145 atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcatatgac 243  Q
    ||||||| ||||||||||||||||| |||||||||||| | |||| |   | ||| ||| |||||||| ||||||||||||||||||||||||||| |||    
T  35780544 atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac 35780445  T
Q  244 ttcctgaatctactac 259  Q
    |||||||| |||||||    
T  35780444 ttcctgaagctactac 35780429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 262
Target Start/End: Complemental strand, 16717133 - 16716980
Alignment:
Q  109 tttatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagt 208  Q
    ||||||||||| ||||||| |||  |||||||||| ||||||||||||| || ||||| || || ||||||||||| ||| ||  |||||||||  ||||    
T  16717133 tttatattgctggcaacagtgatcgtgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagt 16717034  T
Q  209 gatctgcaacccagtcacgggggagttcatatgacttcctgaatctactacagt 262  Q
    ||||||||||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  16717033 gatctgcaacccattcatgggggaattcataagacttcctgaaactactacagt 16716980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 5434 - 5293
Alignment:
Q  110 ttatattgcttgcaacagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtg 209  Q
    ||||||||||||||| ||||||   ||||| |||  |||||||||||| || ||||| || || ||||||||| | ||| ||   |||||||| ||||||    
T  5434 ttatattgcttgcaatagagatcgcgataattttagtattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtg 5335  T
Q  210 atctgcaacccagtcacgggggagttcatatgacttcctgaa 251  Q
    |||||||||||| ||| ||||||||||||| |||||||||||    
T  5334 atctgcaacccattcatgggggagttcataagacttcctgaa 5293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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