View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15101_low_19 (Length: 239)

Name: NF15101_low_19
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15101_low_19
NF15101_low_19
[»] chr2 (18 HSPs)
chr2 (16-152)||(40872086-40872222)
chr2 (176-238)||(21471016-21471078)
chr2 (176-238)||(37547997-37548059)
chr2 (176-238)||(38834623-38834685)
chr2 (177-238)||(13134318-13134379)
chr2 (177-238)||(14573261-14573322)
chr2 (177-238)||(21471941-21472002)
chr2 (177-238)||(4479689-4479750)
chr2 (174-238)||(38834384-38834448)
chr2 (176-238)||(14573986-14574048)
chr2 (177-225)||(33433160-33433208)
chr2 (176-211)||(1164790-1164825)
chr2 (175-225)||(5276463-5276513)
chr2 (177-226)||(40992222-40992271)
chr2 (176-225)||(4478850-4478899)
chr2 (176-225)||(19521917-19521966)
chr2 (147-176)||(39292927-39292956)
chr2 (177-209)||(17069121-17069153)
[»] chr5 (21 HSPs)
chr5 (176-238)||(8204119-8204181)
chr5 (177-238)||(15184004-15184065)
chr5 (176-238)||(33002803-33002865)
chr5 (176-236)||(36626619-36626679)
chr5 (176-238)||(12190145-12190207)
chr5 (176-238)||(33001931-33001993)
chr5 (177-238)||(686417-686477)
chr5 (177-224)||(39950404-39950451)
chr5 (176-238)||(8040194-8040256)
chr5 (178-238)||(687335-687395)
chr5 (176-238)||(8040431-8040493)
chr5 (177-211)||(686667-686701)
chr5 (177-238)||(15183088-15183150)
chr5 (177-211)||(39950446-39950480)
chr5 (176-225)||(13654932-13654981)
chr5 (177-211)||(15183780-15183814)
chr5 (177-226)||(4608589-4608638)
chr5 (182-223)||(39167442-39167483)
chr5 (177-225)||(26688166-26688214)
chr5 (177-225)||(26957897-26957945)
chr5 (176-224)||(33284024-33284072)
[»] chr4 (43 HSPs)
chr4 (176-238)||(11417686-11417748)
chr4 (174-238)||(31836447-31836511)
chr4 (177-238)||(10424123-10424184)
chr4 (177-238)||(11417924-11417985)
chr4 (176-229)||(29651328-29651381)
chr4 (177-238)||(39523258-39523319)
chr4 (176-238)||(10425046-10425108)
chr4 (176-238)||(21166362-21166424)
chr4 (176-238)||(26611270-26611332)
chr4 (177-235)||(38694944-38695002)
chr4 (177-238)||(36865704-36865765)
chr4 (177-238)||(45235947-45236008)
chr4 (176-238)||(9939358-9939420)
chr4 (167-225)||(47198595-47198653)
chr4 (177-238)||(21165447-21165508)
chr4 (181-238)||(38143724-38143781)
chr4 (182-238)||(26610350-26610406)
chr4 (178-238)||(36864818-36864878)
chr4 (177-229)||(45230365-45230417)
chr4 (175-226)||(47377597-47377648)
chr4 (183-225)||(55159186-55159228)
chr4 (178-238)||(29650416-29650476)
chr4 (177-229)||(38694702-38694754)
chr4 (182-225)||(3848578-3848621)
chr4 (177-211)||(10424385-10424419)
chr4 (177-211)||(21166137-21166171)
chr4 (176-226)||(28684231-28684281)
chr4 (177-211)||(29650655-29650689)
chr4 (177-211)||(31836221-31836255)
chr4 (176-238)||(39522374-39522436)
chr4 (177-211)||(45235733-45235767)
chr4 (177-238)||(31835148-31835209)
chr4 (177-226)||(37275088-37275137)
chr4 (176-238)||(9939124-9939183)
chr4 (177-225)||(25371545-25371593)
chr4 (177-229)||(47376852-47376904)
chr4 (182-225)||(3847891-3847934)
chr4 (177-211)||(26611056-26611090)
chr4 (176-225)||(30478308-30478357)
chr4 (177-226)||(30808621-30808670)
chr4 (176-225)||(42544487-42544536)
chr4 (176-225)||(47199395-47199444)
chr4 (176-225)||(48013316-48013365)
[»] chr7 (24 HSPs)
chr7 (177-238)||(668179-668240)
chr7 (177-238)||(17145622-17145683)
chr7 (177-238)||(37468992-37469053)
chr7 (177-238)||(38779550-38779611)
chr7 (176-234)||(37468909-37468967)
chr7 (176-238)||(38778853-38778915)
chr7 (176-238)||(41194512-41194574)
chr7 (179-234)||(7677800-7677855)
chr7 (176-238)||(4261583-4261645)
chr7 (176-238)||(37864294-37864356)
chr7 (176-238)||(38071897-38071959)
chr7 (181-238)||(4261209-4261266)
chr7 (177-238)||(17145859-17145920)
chr7 (177-238)||(38072278-38072339)
chr7 (177-238)||(669090-669151)
chr7 (181-238)||(7677421-7677478)
chr7 (182-225)||(42455040-42455083)
chr7 (178-211)||(668420-668453)
chr7 (176-226)||(29006346-29006396)
chr7 (176-210)||(37864091-37864125)
chr7 (174-224)||(44909360-44909410)
chr7 (184-225)||(20890206-20890247)
chr7 (176-224)||(45887981-45888029)
chr7 (176-224)||(47331954-47332002)
[»] chr6 (23 HSPs)
chr6 (177-238)||(33480615-33480676)
chr6 (176-238)||(7193337-7193399)
chr6 (172-238)||(33018403-33018469)
chr6 (177-238)||(3543050-3543111)
chr6 (181-238)||(22582466-22582523)
chr6 (181-238)||(22587297-22587354)
chr6 (179-238)||(33479698-33479757)
chr6 (177-238)||(22579935-22579996)
chr6 (177-238)||(33018167-33018228)
chr6 (177-229)||(15083314-15083366)
chr6 (179-234)||(3542816-3542871)
chr6 (177-225)||(7531829-7531877)
chr6 (182-238)||(15082402-15082458)
chr6 (176-238)||(7193565-7193627)
chr6 (177-211)||(15082638-15082672)
chr6 (177-211)||(22580597-22580631)
chr6 (177-211)||(22587083-22587117)
chr6 (177-211)||(33479938-33479972)
chr6 (172-225)||(14337557-14337610)
chr6 (177-226)||(24125972-24126021)
chr6 (177-229)||(24126714-24126766)
chr6 (176-225)||(7532440-7532489)
chr6 (177-225)||(9574571-9574619)
[»] chr3 (37 HSPs)
chr3 (177-238)||(19132563-19132624)
chr3 (176-234)||(36750428-36750486)
chr3 (177-238)||(19132799-19132860)
chr3 (174-238)||(32490182-32490246)
chr3 (178-238)||(38922744-38922804)
chr3 (177-238)||(32489946-32490007)
chr3 (177-234)||(38923656-38923713)
chr3 (178-238)||(45242067-45242127)
chr3 (177-229)||(45242983-45243035)
chr3 (177-224)||(31556217-31556264)
chr3 (176-229)||(44687159-44687212)
chr3 (177-226)||(49757181-49757230)
chr3 (182-234)||(36750050-36750102)
chr3 (177-212)||(52491891-52491926)
chr3 (175-238)||(52492266-52492329)
chr3 (177-223)||(17226968-17227014)
chr3 (177-211)||(38923438-38923472)
chr3 (176-234)||(41755498-41755556)
chr3 (176-234)||(41756423-41756481)
chr3 (176-238)||(44686254-44686315)
chr3 (177-211)||(45242307-45242341)
chr3 (179-238)||(3970994-3971053)
chr3 (179-238)||(3998828-3998887)
chr3 (177-224)||(21811879-21811926)
chr3 (177-224)||(31556188-31556235)
chr3 (175-226)||(37105076-37105127)
chr3 (177-211)||(3971233-3971267)
chr3 (176-238)||(3971889-3971951)
chr3 (176-238)||(3997927-3997989)
chr3 (177-211)||(3998614-3998648)
chr3 (176-226)||(14667296-14667345)
chr3 (177-211)||(41755729-41755763)
chr3 (176-226)||(49756274-49756324)
chr3 (177-218)||(17227955-17227996)
chr3 (176-225)||(43638078-43638127)
chr3 (177-225)||(39901846-39901894)
chr3 (178-226)||(42145277-42145325)
[»] chr1 (29 HSPs)
chr1 (177-238)||(16270207-16270268)
chr1 (177-238)||(23440852-23440913)
chr1 (176-235)||(51974436-51974495)
chr1 (176-238)||(43737965-43738027)
chr1 (176-238)||(48972432-48972494)
chr1 (177-238)||(9948874-9948935)
chr1 (177-238)||(193850-193911)
chr1 (177-238)||(23440617-23440678)
chr1 (177-238)||(43737729-43737790)
chr1 (179-238)||(38931234-38931293)
chr1 (177-238)||(16271135-16271196)
chr1 (177-238)||(50827078-50827138)
chr1 (177-235)||(51975217-51975275)
chr1 (176-225)||(51987826-51987875)
chr1 (177-229)||(9947995-9948047)
chr1 (177-229)||(48971705-48971757)
chr1 (191-238)||(6075988-6076035)
chr1 (176-226)||(1012546-1012596)
chr1 (177-211)||(16270901-16270935)
chr1 (177-211)||(38930574-38930608)
chr1 (176-225)||(35616775-35616824)
chr1 (177-238)||(38930312-38930373)
chr1 (177-225)||(8560839-8560887)
chr1 (177-225)||(51988464-51988512)
chr1 (177-211)||(51974979-51975013)
chr1 (201-238)||(31390810-31390847)
chr1 (177-225)||(194701-194749)
chr1 (177-225)||(37874064-37874112)
chr1 (175-223)||(48869767-48869815)
[»] chr8 (21 HSPs)
chr8 (176-236)||(41859309-41859369)
chr8 (175-238)||(34992251-34992314)
chr8 (176-238)||(5034897-5034959)
chr8 (177-238)||(5035263-5035324)
chr8 (177-238)||(32536708-32536769)
chr8 (184-229)||(37639718-37639763)
chr8 (176-225)||(61453-61502)
chr8 (177-238)||(34992015-34992076)
chr8 (177-225)||(1365829-1365877)
chr8 (176-211)||(44098435-44098470)
chr8 (176-238)||(41860083-41860145)
chr8 (176-225)||(25876520-25876569)
chr8 (177-225)||(39254787-39254835)
chr8 (177-211)||(32536946-32536980)
chr8 (177-226)||(27918046-27918095)
chr8 (177-234)||(38023624-38023681)
chr8 (177-210)||(38023857-38023890)
chr8 (176-225)||(39255752-39255801)
chr8 (176-225)||(44751607-44751656)
chr8 (177-225)||(62240-62288)
chr8 (177-225)||(42345166-42345214)
[»] scaffold0311 (1 HSPs)
scaffold0311 (175-234)||(151-210)
[»] scaffold0041 (2 HSPs)
scaffold0041 (177-238)||(27221-27282)
scaffold0041 (177-238)||(27562-27623)
[»] scaffold1037 (1 HSPs)
scaffold1037 (176-225)||(2899-2948)
[»] scaffold1031 (1 HSPs)
scaffold1031 (176-225)||(3018-3067)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 40872086 - 40872222
Alignment:
Q  16 attccacctcctcatgccggccgccttctgtctcaccacccggctatggcggcaagctgagccgtcagcaaaatgttgcaatgcaatgggtccaaaataa 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40872086 attccacctcctcatgccggccaccttctgtctcaccacccggctatggcggcaagctgagccgtcagcaaaatgttgcaatgcaatgggtccaaaaaaa 40872185  T
Q  116 ttacttggtctatgattattgtcatgatcctaagaga 152  Q
    |||||||||||||||||||||||||||||||||||||    
T  40872186 ttacttggtctatgattattgtcatgatcctaagaga 40872222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 21471016 - 21471078
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 21471078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 37547997 - 37548059
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  37547997 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccat 37548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 38834685 - 38834623
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  38834685 aggtgccatttaatttgggaaaggagagttttttcctaccgtgggaaagttgatcatgtccat 38834623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 13134318 - 13134379
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccat 13134379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 14573261 - 14573322
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccat 14573322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 21472002 - 21471941
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccat 21471941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 4479750 - 4479689
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagttaatcatgtccat 4479689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 38834384 - 38834448
Alignment:
Q  174 tgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||| || |||||| |||| |||||||||||| ||||||||    
T  38834384 tgaggtgccatttaatttgggaaaggagggtactttcccaccacgggaaagttgatcatgtccat 38834448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 14574048 - 14573986
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||| || |||||    
T  14574048 aggtgccatttaatttgggaaaggagagttctttcccaccataagaaagttgatcatatccat 14573986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 33433208 - 33433160
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  33433208 ggtgccgtttaatttgagaaaggagagttctttcccaccatgggaaagt 33433160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 1164825 - 1164790
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  1164825 aggtgccatttaatttgggaaaggagagttctttcc 1164790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 5276463 - 5276513
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||||||||||    
T  5276463 gaggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 5276513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 40992222 - 40992271
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagtt 40992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 4478850 - 4478899
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  4478850 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 4478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 19521966 - 19521917
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  19521966 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 19521917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 39292927 - 39292956
Alignment:
Q  147 aagagaaaacctcttacaaaatattagtga 176  Q
    ||||||||||||||||||||||||||||||    
T  39292927 aagagaaaacctcttacaaaatattagtga 39292956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 17069121 - 17069153
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttcttt 209  Q
    |||||||||||||||| ||||||||||||||||    
T  17069121 ggtgccatttaatttgagaaaggagagttcttt 17069153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 8204119 - 8204181
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 8204181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 15184065 - 15184004
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 15184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 33002865 - 33002803
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 33002803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 36626679 - 36626619
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtcc 236  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  36626679 aggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagttgatcatgtcc 36626619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 12190207 - 12190145
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||    
T  12190207 aggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagttgatcatgtccat 12190145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 33001931 - 33001993
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  33001931 aggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccat 33001993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 686417 - 686477
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  686417 ggtgccatttaatttgggaaaggagagtt-tttcccaccatgggaaagttgatcatgtccat 686477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 8040194 - 8040256
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||| |||||||||| | | ||||||||||||| ||||||||    
T  8040194 aggtgccatttaatttgggaaaggacagttctttcccatcgtgggaaagttgatcatgtccat 8040256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 687395 - 687335
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||| | || |||| ||||||||| ||||||||    
T  687395 gtgccatttaatttgggaaaggagagttcttttccactatggaaaagttgattatgtccat 687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 8040493 - 8040431
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||| | |||||||| ||| |||||||||| || ||||||||    
T  8040493 aggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagttaatcatgtccat 8040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 686701 - 686667
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  686701 ggtgccatttaatttgggaaaggagagttctttcc 686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 15183088 - 15183150
Alignment:
Q  177 ggtgccatttaatttgggaaaggagag-ttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||| || ||||| | |||| |||||||||| ||||||||    
T  15183088 ggtgccatttaatttgggaaaggagagtttatttcccatcatgagaaagttgatcatgtccat 15183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 39950480 - 39950446
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  39950480 ggtgccatttaatttgggaaaggagagttctttcc 39950446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 13654932 - 13654981
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| |||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagt 13654981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 15183780 - 15183814
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||| ||||||||||||||||||||||||    
T  15183780 ggtgccatttgatttgggaaaggagagttctttcc 15183814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 4608638 - 4608589
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||||||||| ||||||||||  ||| ||||| ||||||||||||||    
T  4608638 ggtgccatttaatctgggaaaggaatgttatttcccaccatgggaaagtt 4608589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 39167483 - 39167442
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaa 223  Q
    ||||||||||||||||||||| |||||||| | |||||||||    
T  39167483 catttaatttgggaaaggagacttctttcccatcatgggaaa 39167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 26688166 - 26688214
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||||||||||||||||||| | | |||||||| | |||||||||||    
T  26688166 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 26688214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 26957897 - 26957945
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||||||||||||||||||| | | |||||||| | |||||||||||    
T  26957897 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 26957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 33284072 - 33284024
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||||||||||||||||||||||  |||| | ||| ||||||||||||    
T  33284072 aggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 33284024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 11417686 - 11417748
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 11417748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 31836511 - 31836447
Alignment:
Q  174 tgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||    
T  31836511 tgaggtgccatttaatttgagaaaggagagttctttcccaccatgggaaagttgatcatgtccat 31836447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 10424123 - 10424184
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagttgatcatgtccat 10424184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 11417985 - 11417924
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 11417924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 29651381 - 29651328
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgat 29651328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 39523319 - 39523258
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  39523319 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccat 39523258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 10425108 - 10425046
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  10425108 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatatccat 10425046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 21166424 - 21166362
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||    
T  21166424 aggtgccatttaatttgagaaaggagagttctttcccatcatgggaaagttgatcatgtccat 21166362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 26611332 - 26611270
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccat 26611270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 38695002 - 38694944
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtc 235  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgatcatgtc 38694944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 36865765 - 36865704
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccat 36865704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 45236008 - 45235947
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagttaatcatgtccat 45235947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 9939420 - 9939358
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  9939420 aggtgccatttaatttgagaaaggggagttctttcccaccatggaaaagttgatcatgtccat 9939358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 47198595 - 47198653
Alignment:
Q  167 atattagtgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  47198595 atataagtgaggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagt 47198653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 21165447 - 21165508
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||| | |||||||||| |||||| |||||||||| ||||||||    
T  21165447 ggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagttgatcatgtccat 21165508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 38143781 - 38143724
Alignment:
Q  181 ccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||    
T  38143781 ccatttaatttgggaaatgagagttctttcccaccatgggaaagttggtcatgtccat 38143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 26610350 - 26610406
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||    
T  26610350 catttaatttgggaaatgagagttctttcccaccatgggaaaattgatcatgtccat 26610406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 36864818 - 36864878
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||| ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagttgatcatgtccat 36864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 45230365 - 45230417
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  45230365 ggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagttgat 45230417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 47377648 - 47377597
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  47377648 gaggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 47377597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 55159186 - 55159228
Alignment:
Q  183 atttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagt 55159228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 29650416 - 29650476
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||| ||||||||||| | | | ||||||||||||| ||||||||    
T  29650416 gtgccatttaatttgggaaatgagagttcttttccatcttgggaaagttgatcatgtccat 29650476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 38694702 - 38694754
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    ||||||||||||||||| ||||||||||||||||| | ||||| |||||||||    
T  38694702 ggtgccatttaatttggaaaaggagagttctttcccagcatggaaaagttgat 38694754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 3848621 - 3848578
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccatgggaaagt 3848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 10424419 - 10424385
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  10424419 ggtgccatttaatttgggaaaggagagttctttcc 10424385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 21166137 - 21166171
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  21166137 ggtgccatttaatttgggaaaggagagttctttcc 21166171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 28684281 - 28684231
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||| ||||||||||||||||||||| || ||||||||||| ||||||||    
T  28684281 aggtgacatttaatttgggaaaggagacttttttcctaccataggaaagtt 28684231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 29650689 - 29650655
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  29650689 ggtgccatttaatttgggaaaggagagttctttcc 29650655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 31836221 - 31836255
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  31836221 ggtgccatttaatttgggaaaggagagttctttcc 31836255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 39522374 - 39522436
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||| ||||||||||||||||||| ||||||||   ||||||||||||||||| || |||||    
T  39522374 aggtgtcatttaatttgggaaaggatagttctttttcaccatgggaaagttgatcatatccat 39522436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 45235733 - 45235767
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  45235733 ggtgccatttaatttgggaaaggagagttctttcc 45235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 31835148 - 31835209
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||  |||| | |||||||||| ||||| ||||||||||| ||||||||    
T  31835148 ggtgccatttaatttgaaaaagtatagttctttcccaccataggaaagttgattatgtccat 31835209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 37275088 - 37275137
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||| ||||||||||||||||||| |||||||| |||||| |||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagtt 37275137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 9939124 - 9939183
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||| ||||||||||||||||| |||||||||| ||   |||||||||||||| ||||||||    
T  9939124 aggtgtcatttaatttgggaaagtagagttcttttct---atgggaaagttgatcatgtccat 9939183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 25371593 - 25371545
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 47376852 - 47376904
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||| |||||||||||||||||| ||||| ||||| | |||||||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgat 47376904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||| || ||||| |||||||||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 26611056 - 26611090
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||||||| |||||||||||||    
T  26611056 ggtgccatttaatttgggaaatgagagttctttcc 26611090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 30478308 - 30478357
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  30478308 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 30478357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 30808621 - 30808670
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||| |||||||  ||||||||||||||| ||||| ||||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagtt 30808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 42544487 - 42544536
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| ||| || ||||| ||||||| |||||    
T  42544487 aggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagt 42544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 47199444 - 47199395
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| |||||||||||||||| |||| |||||||| ||||| |||||||    
T  47199444 aggtggcatttaatttgggaaaagagacttctttcccaccataggaaagt 47199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 48013316 - 48013365
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  48013316 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 48013365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 668179 - 668240
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 668240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 17145622 - 17145683
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 17145683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 37469053 - 37468992
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 37468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 38779611 - 38779550
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 38779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 37468909 - 37468967
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgt 37468967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 38778853 - 38778915
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatatccat 38778915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 41194512 - 41194574
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  41194512 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttaatcatgtccat 41194574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 7677855 - 7677800
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgt 7677800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 4261645 - 4261583
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  4261645 aggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatctccat 4261583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 37864356 - 37864294
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||    
T  37864356 aggtgccatttaatttgggaaataagagttctttcccaccatgggaaagttgatcatgtccat 37864294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 38071897 - 38071959
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||    
T  38071897 aggtgccatttaatttaggaaaggagagttctttcccatcatgggaaagttgatcatgtccat 38071959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 4261209 - 4261266
Alignment:
Q  181 ccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  4261209 ccatttaatttaggaaaggagagttcttttctaccatgggaaagttgatcatgtccat 4261266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 17145920 - 17145859
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  17145920 ggtgccatttaatttgggaaaggagagttcttttttactatgggaaagttgatcatgtccat 17145859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 38072339 - 38072278
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaagttgatcatgtccat 38072278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 669151 - 669090
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| || |||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaagttgatcatatccat 669090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 7677421 - 7677478
Alignment:
Q  181 ccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||| |||||||| ||||||  ||||||||| ||||||||    
T  7677421 ccatttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccat 7677478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 42455040 - 42455083
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  42455040 catttaatttgggaaaggagacttcttttctaccatgggaaagt 42455083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 668453 - 668420
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||||||||||||||||||||    
T  668453 gtgccatttaatttgggaaaggagagttctttcc 668420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 29006346 - 29006396
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||||||||||||||||||||   ||| ||||| ||||||||||||||    
T  29006346 aggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagtt 29006396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 37864091 - 37864125
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttc 210  Q
    ||||||||||||||||||||||||| |||||||||    
T  37864091 aggtgccatttaatttgggaaaggaaagttctttc 37864125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 44909410 - 44909360
Alignment:
Q  174 tgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||||||| ||||||||||||||||  |||| ||||| ||||||||||||    
T  44909410 tgaggtgccgtttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 20890206 - 20890247
Alignment:
Q  184 tttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  20890206 tttaatttgggaaaggacagttttttcccaccatgggaaagt 20890247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 45888029 - 45887981
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||| ||||||||||||||||||  |||| ||||| ||||||||||||    
T  45888029 aggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 45887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 47332002 - 47331954
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||| ||||||||||||||||||  |||| ||||| ||||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaag 47331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 33480676 - 33480615
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 33480615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 7193337 - 7193399
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatctccat 7193399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 33018469 - 33018403
Alignment:
Q  172 agtgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33018469 agtgaggtgtcgtttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 33018403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 3543111 - 3543050
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccat 3543050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 22582523 - 22582466
Alignment:
Q  181 ccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22582523 ccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 22582466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 22587354 - 22587297
Alignment:
Q  181 ccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22587354 ccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 22587297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 33479698 - 33479757
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  33479698 tgccatttaatttgggaaaggagagttatttcccaccatgggaaagttgatcatgtccat 33479757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 22579935 - 22579996
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatatccat 22579996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 33018167 - 33018228
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||    
T  33018167 ggtgccatttaatttgggaaaggagagttctttcccatcattggaaagttgatcatgtccat 33018228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 15083366 - 15083314
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttgat 15083314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 3542816 - 3542871
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgt 3542871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 7531829 - 7531877
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaagt 7531877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 15082402 - 15082458
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||||||||| | | ||||||||||||||| ||||||||    
T  15082402 catttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccat 15082458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 7193627 - 7193565
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| ||||| |||||||||| | | ||||||||||||||| || |||||    
T  7193627 aggtgccatttaatttgagaaagtagagttcttttccatcatgggaaagttgatcatatccat 7193565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 15082672 - 15082638
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  15082672 ggtgccatttaatttgggaaaggagagttctttcc 15082638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 22580597 - 22580631
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  22580597 ggtgccatttaatttgggaaaggagagttctttcc 22580631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 22587083 - 22587117
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  22587083 ggtgccatttaatttgggaaaggagagttctttcc 22587117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 33479972 - 33479938
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  33479972 ggtgccatttaatttgggaaaggagagttctttcc 33479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 14337610 - 14337557
Alignment:
Q  172 agtgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  14337610 agtgaggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 14337557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 24125972 - 24126021
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtt 24126021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 24126766 - 24126714
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||| |||||||||||||||||| ||||| ||||| | |||||||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgat 24126714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 7532489 - 7532440
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||||||||||||||||| ||||||   |||||||||||||    
T  7532489 aggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 9574619 - 9574571
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||| ||||||||||||| |||||||| ||||| |||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagt 9574571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 19132563 - 19132624
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctactatgggaaagttgatcatgtccat 19132624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 36750486 - 36750428
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgt 36750428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 19132860 - 19132799
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccat 19132799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 32490246 - 32490182
Alignment:
Q  174 tgaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  32490246 tgaggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccat 32490182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 38922744 - 38922804
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  38922744 gtgccatttaatttgggaaaggagagttatttcctaccatgggaaagttgatcatatccat 38922804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 32489946 - 32490007
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||    
T  32489946 ggtgccatttaatttgggaaaggagaattcttttccaccatgggaaagttgatcatgtccat 32490007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 38923713 - 38923656
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagttgataatgt 38923656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 45242067 - 45242127
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||| ||||||||||| | | ||||||||||||||| ||||||||    
T  45242067 gtgccatttaatttgggaaatgagagttcttttccatcatgggaaagttgatcatgtccat 45242127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 45243035 - 45242983
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  45243035 ggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagttgat 45242983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 44687212 - 44687159
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    ||||||||||||||||||||||||||| |||||| | ||||||| |||||||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagttgat 44687159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 49757230 - 49757181
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagtt 49757181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 36750050 - 36750102
Alignment:
Q  182 catttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||| ||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaagttgatcatgt 36750102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 52491891 - 52491926
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcct 212  Q
    ||||||||||||||||||||||||||||||||||||    
T  52491891 ggtgccatttaatttgggaaaggagagttctttcct 52491926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 52492329 - 52492266
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||| |||||||||||||||| ||||||||||| | ||||||| ||||||| | ||||||||    
T  52492329 gaggtgtcatttaatttgggaaatgagagttcttttccaccatggaaaagttgttcatgtccat 52492266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 17226968 - 17227014
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaa 223  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaa 17227014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 38923438 - 38923472
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  38923438 ggtgccatttaatttgggaaaggagagttctttcc 38923472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 41755498 - 41755556
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||| |||||||||||||||||||||||| ||||| |||||| |||| ||||| ||||    
T  41755498 aggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaaattgatcatgt 41755556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 41756481 - 41756423
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||| ||||||| || ||||||||||||||||||| | ||||||||||||||| ||||    
T  41756481 aggtgtcatttaagttaggaaaggagagttctttcccatcatgggaaagttgatcatgt 41756423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 44686254 - 44686315
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||| ||||||||||| ||| | |||||| |||||||||| ||||||||    
T  44686254 aggtgccatttaatttggaaaaggagagtttttttc-accatgagaaagttgatcatgtccat 44686315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 45242341 - 45242307
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  45242341 ggtgccatttaatttgggaaaggagagttctttcc 45242307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 3970994 - 3971053
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||| ||||||| |||   ||||||| ||||||||| ||||||||    
T  3970994 tgccatttaatttgggaaatgagagttttttttcaccatggaaaagttgatcatgtccat 3971053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 3998887 - 3998828
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||| ||||||| |||   ||||||| ||||||||| ||||||||    
T  3998887 tgccatttaatttgggaaatgagagttttttttcaccatggaaaagttgatcatgtccat 3998828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 21811879 - 21811926
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    |||||| |||||||||||||| |||| || ||||||||||||||||||    
T  21811879 ggtgccgtttaatttgggaaatgagacttttttcctaccatgggaaag 21811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 31556188 - 31556235
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaag 224  Q
    ||||||||||||||||| ||||||||||||||||| |  |||||||||    
T  31556188 ggtgccatttaatttggaaaaggagagttctttcccatgatgggaaag 31556235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 37105127 - 37105076
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||||| |||||||||||||| |||| || ||||| ||||||||||||||    
T  37105127 gaggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagtt 37105076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 3971267 - 3971233
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||| ||||||||||||||||||||||||||||||    
T  3971267 ggtgtcatttaatttgggaaaggagagttctttcc 3971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 3971951 - 3971889
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||| || |||||||||| |  |||||||||||||| || |||||    
T  3971951 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccat 3971889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 3997927 - 3997989
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| ||||| || |||||||||| |  |||||||||||||| || |||||    
T  3997927 aggtgccatttaatttaggaaatgaaagttctttcccatgatgggaaagttgatcatatccat 3997989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 3998614 - 3998648
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||| ||||||||||||||||||||||||||||||    
T  3998614 ggtgtcatttaatttgggaaaggagagttctttcc 3998648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 14667296 - 14667345
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||    
T  14667296 aggtgccgtttaatttgggaaaggaga-ttttttcccaccatgggaaagtt 14667345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 41755763 - 41755729
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||| ||||||    
T  41755763 ggtgccatttaatttgggaaaggagagtactttcc 41755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 49756274 - 49756324
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||||||||||||||| ||||||  ||| ||||| ||||||||||||||    
T  49756274 aggtgccatttaatttggaaaaggaatgttatttcccaccatgggaaagtt 49756324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 17227996 - 17227955
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatg 218  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatg 17227955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 43638127 - 43638078
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  43638127 aggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 43638078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 39901846 - 39901894
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||| |||||  ||||||| ||||||||||||| |||||||||||||    
T  39901846 ggtgccgtttaacctgggaaatgagagttctttcccaccatgggaaagt 39901894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 42145325 - 42145277
Alignment:
Q  178 gtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||||||||||||||||||||| || ||| | ||||| ||||||||    
T  42145325 gtgccatttaatttgggaaaggagactttttttccaccataggaaagtt 42145277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 16270207 - 16270268
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 16270268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 23440913 - 23440852
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 23440852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 51974436 - 51974495
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtc 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtc 51974495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 43738027 - 43737965
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  43738027 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccat 43737965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 48972494 - 48972432
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  48972494 aggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccat 48972432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 9948935 - 9948874
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9948935 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagttgatcatgtccat 9948874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 193850 - 193911
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagttaatcatgtccat 193911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 23440617 - 23440678
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagttgattatgtccat 23440678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 43737729 - 43737790
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||    
T  43737729 ggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagttgatcatgtccat 43737790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 38931293 - 38931234
Alignment:
Q  179 tgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||    
T  38931293 tgccatttaatttgggaaagaagagttcttttctaccatgggaaagttgatcatatccat 38931234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 16271196 - 16271135
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||| ||||||||    
T  16271196 ggtgccatttaatttaggaaaggagagttctttctcatcatgggaaagttgatcatgtccat 16271135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 50827138 - 50827078
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||    
T  50827138 ggtgccatttaatttgagaaaggagagtt-tttcccaccatgggaaagttgatcatgtccat 50827078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 51975275 - 51975217
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtc 235  Q
    |||||||||||||||||||||||||||||||||   || |||||||||||||| |||||    
T  51975275 ggtgccatttaatttgggaaaggagagttctttttcactatgggaaagttgatcatgtc 51975217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 51987826 - 51987875
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 9947995 - 9948047
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||||||||||||||||||||| | |||||||||| ||||||| |||||||||    
T  9947995 ggtgccatttaatttgggaaagaaaagttctttcccaccatggaaaagttgat 9948047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 48971705 - 48971757
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||| |||||||||||||||||||||||||||||| || ||| ||||||||||    
T  48971705 ggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaagttgat 48971757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 6075988 - 6076035
Alignment:
Q  191 tgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  6075988 tgggaaaggagagttcttttctaccatgagaaagttgatcatgtccat 6076035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1012546 - 1012596
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||||||||    
T  1012546 aggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagtt 1012596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 16270901 - 16270935
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  16270901 ggtgccatttaatttgggaaaggagagttctttcc 16270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 38930608 - 38930574
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    |||||||||||||||||||||||||||||||||||    
T  38930608 ggtgccatttaatttgggaaaggagagttctttcc 38930574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 35616824 - 35616775
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagt 35616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 38930312 - 38930373
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||| ||||||||||||||||||| ||||||||   ||||||||||||||||| || |||||    
T  38930312 ggtgtcatttaatttgggaaaggaaagttctttttcaccatgggaaagttgatcatatccat 38930373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 8560839 - 8560887
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| |||||||| | |||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagt 8560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 51988512 - 51988464
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| |||||| | |||||||||||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaagt 51988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 51974979 - 51975013
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||||||||||| |||||||||    
T  51974979 ggtgccatttaatttgggaaaggagggttctttcc 51975013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 31390847 - 31390810
Alignment:
Q  201 gagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  31390847 gagttctttcccaccatgggaaagttgattatgtccat 31390810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 194749 - 194701
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||||||||||||||||||| | | |||||||| | |||||||||||    
T  194749 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 194701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 37874064 - 37874112
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||| |||||||| |||| |||||||| |||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagt 37874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 48869767 - 48869815
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaa 223  Q
    |||||| ||||||| ||||||||||||| |||||| | |||||||||||    
T  48869767 gaggtgacatttaacttgggaaaggagacttcttttccaccatgggaaa 48869815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 41859309 - 41859369
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtcc 236  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgtcc 41859369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 34992314 - 34992251
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  34992314 gaggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagttgatcatgtccat 34992251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 5034897 - 5034959
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  5034897 aggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagttgatcatgtccat 5034959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 5035324 - 5035263
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||    
T  5035324 ggtgccatttaatttgggaaaggagagttcttttccaccataggaaagttgatcatgtccat 5035263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 32536708 - 32536769
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  32536708 ggtgccatttaatttaggaaatgagagttctttcccaccatgggaaagttgatcatgtccat 32536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 37639718 - 37639763
Alignment:
Q  184 tttaatttgggaaaggagagttctttcctaccatgggaaagttgat 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccatgggaaagttgat 37639763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 61453 - 61502
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  61453 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 61502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 34992015 - 34992076
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||| ||||||||    
T  34992015 ggtgccatttaatttgggaaacgagagttattttccaccatggaaaagttgatcatgtccat 34992076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 1365829 - 1365877
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 1365877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 44098470 - 44098435
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||||||||||||||||||||||    
T  44098470 aggtgccatttaatttgggaaaggagagttctttcc 44098435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 41860145 - 41860083
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||| |||||| |||  ||| |||| ||||||||| ||||||||    
T  41860145 aggtgccatttaatttgggaaagaagagttattttttactatggaaaagttgatcatgtccat 41860083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 25876520 - 25876569
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||||||||||||||||||||| ||| || ||||| |||||||||||||    
T  25876520 aggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagt 25876569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 39254787 - 39254835
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||||||||||||| |||||||| ||||| |||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagt 39254835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 32536980 - 32536946
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcc 211  Q
    ||||||||||||||||| |||||||||||||||||    
T  32536980 ggtgccatttaatttggaaaaggagagttctttcc 32536946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 27918095 - 27918046
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagtt 226  Q
    |||||| |||||||||||||| |||| || ||||| ||||||||||||||    
T  27918095 ggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagtt 27918046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 38023624 - 38023681
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    |||| ||||||||||||||||||||| |||||| | | ||||| ||||||||| ||||    
T  38023624 ggtgtcatttaatttgggaaaggagaattcttttccatcatggaaaagttgatcatgt 38023681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 38023890 - 38023857
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttc 210  Q
    ||||| ||||||||||||||||||||||||||||    
T  38023890 ggtgctatttaatttgggaaaggagagttctttc 38023857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 39255801 - 39255752
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||| |||||||| |||| |||||||| |||||||||||||    
T  39255801 aggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagt 39255752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 44751607 - 44751656
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    ||||| ||||||| ||||||||||||| |||||||| | |||||||||||    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagt 44751656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 62288 - 62240
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||| ||||||||||| ||||||||| |||||||| ||||| |||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagt 62240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 42345166 - 42345214
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||||||||||||||||||| | | |||||||| | |||||||||||    
T  42345166 ggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 42345214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 210 - 151
Alignment:
Q  175 gaggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgt 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  210 gaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgattatgt 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 27221 - 27282
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccat 27282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 27623 - 27562
Alignment:
Q  177 ggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagttgatgatgtccat 238  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagttgatcatatccat 27562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 2948 - 2899
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||| ||||||| |||||||||| | |||||| |||||||||||||||    
T  2948 aggtgctatttaatctgggaaaggatacttcttttctaccatgggaaagt 2899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 3067 - 3018
Alignment:
Q  176 aggtgccatttaatttgggaaaggagagttctttcctaccatgggaaagt 225  Q
    |||||| ||||||| |||||||||| | |||||| |||||||||||||||    
T  3067 aggtgctatttaatctgggaaaggatacttcttttctaccatgggaaagt 3018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University