View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_low_21 (Length: 229)
Name: NF15101_low_21
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 25474255 - 25474059
Alignment:
| Q |
18 |
atatacaaaattaatggcattcataattcatttctctgttactaatattgaaacctaatgtaaagtaaataagtattagcctccaagaattaaaataact |
117 |
Q |
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| T |
25474255 |
atatacaaaatttatgacattcataattcatttctatgttactaatgttgaaacctaatgtaaagtaaataagtattagcctccaagaattaaaataact |
25474156 |
T |
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| Q |
118 |
atccaagcatttaaaaaagtgttaaagtgaattccggttaccctctataataattttttattccaaccttataatttgtaatttaaagattcttttc |
214 |
Q |
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| T |
25474155 |
atccaagcatttaaaaaagtgttaaagcgaattccggttaccctctttaataattttttattccaaccttataatttgtaatttaaagattcatttc |
25474059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 32558781 - 32558823
Alignment:
| Q |
60 |
taatattgaaacctaatgtaaagtaaataagtattagcctcca |
102 |
Q |
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| T |
32558781 |
taatattcaaacccaatgtaaagtaaataagtattggcctcca |
32558823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 17590531 - 17590445
Alignment:
| Q |
47 |
atttctctgttactaatattgaaacctaatgtaaagtaaataagtattagcctccaagaattaaaataact-atccaagcatttaaaa |
133 |
Q |
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| T |
17590531 |
atttcactgtaactaatatttaaacccaat-taaagcaaataagtcttatcctccaaggcttaaaataattcatccaagcatttaaaa |
17590445 |
T |
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