View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15101_low_3 (Length: 594)
Name: NF15101_low_3
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_3 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Original strand, 33370010 - 33370581
Alignment:
| Q |
17 |
acttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370010 |
acttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgag |
33370109 |
T |
|
| Q |
117 |
agtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370110 |
agtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccc |
33370209 |
T |
|
| Q |
217 |
cctggatatcccaatgga--cccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaac |
314 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370210 |
cctggatatcccaatggacccccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaac |
33370309 |
T |
|
| Q |
315 |
tggtccannnnnnnncatggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctact |
414 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370310 |
tggtccattttttttcatggcagcaagtccactaccactccggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctact |
33370409 |
T |
|
| Q |
415 |
taacacctggtcaggcgacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaag |
514 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33370410 |
taacacctggtctggtgacaaaaatcagatgtggactccaggtgtttcgacaatgctacaggttctagtctccatacaaattctaatcttgaatgcaaag |
33370509 |
T |
|
| Q |
515 |
ccttacttcaatgaacctggatgggcaccttcaaagggcacaccgggcggtgaagctagttccctgcagtat |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| | ||||||||||||| |
|
|
| T |
33370510 |
ccttacttcaatgaacctggatgggcaccttcgaagggcaaaccgggtggtgaagcgaattccctgcagtat |
33370581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 57 - 536
Target Start/End: Original strand, 33363708 - 33364186
Alignment:
| Q |
57 |
tcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgatt |
156 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
33363708 |
tcaatctgaccatttctttgacttttttctttaatgcttgtcagatacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgatt |
33363807 |
T |
|
| Q |
157 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| || |
|
|
| T |
33363808 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaat |
33363907 |
T |
|
| Q |
257 |
actttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctg |
356 |
Q |
| |
|
||||||| | ||||| ||||||||| || ||||| ||| |||||||||| |||||| ||| || ||||| | |||||||||||||||| |
|
|
| T |
33363908 |
actttatttagctgacattattttcttgtgcactctttttaattcaattctgacaaa-tgggacaattttttgtggggcagaaagtccactaccactctg |
33364006 |
T |
|
| Q |
357 |
gtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactccatg |
456 |
Q |
| |
|
|||| |||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
|
|
| T |
33364007 |
taggtcatcggcttaatccaaatttgtatgattgtggcaaagtatgcctcagtctacttaacacctggtctggcgacaagaatcagatgtggactccagg |
33364106 |
T |
|
| Q |
457 |
tgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaacctggat |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33364107 |
tgtttcgacaatgctacaggttctagtctccatacaagggctaatcttgaatgcgaagccttacttcaatgaacctggat |
33364186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 5839391 - 5839238
Alignment:
| Q |
95 |
catcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctttt |
194 |
Q |
| |
|
|||||||| |||||||||| |||| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5839391 |
catcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctttt |
5839292 |
T |
|
| Q |
195 |
cttttttgatgtttactttccccctggatatcccaatggacccccggtatgtgg |
248 |
Q |
| |
|
|||||| ||| ||||||| || ||| | |||||||| ||| ||||||||||| |
|
|
| T |
5839291 |
ctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg |
5839238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 506
Target Start/End: Complemental strand, 5839010 - 5838961
Alignment:
| Q |
457 |
tgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttga |
506 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
5839010 |
tgtttcaacaattctacaggttctagtctccattcaaggtctagtcttga |
5838961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 32 - 586
Target Start/End: Original strand, 41431738 - 41432291
Alignment:
| Q |
32 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
130 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41431738 |
tgtgaaacctgtttctggcatattgatcaacctgaccatatctttgacttttttctttaatgctcatcagatacaatatttgtgagagtcttcgaatcaa |
41431837 |
T |
|
| Q |
131 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
41431838 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaa |
41431937 |
T |
|
| Q |
231 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
330 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| ||| |||||| | |
|
|
| T |
41431938 |
tgtacccccggtacgtggttgatgatactttatctgactgacattattttcttgttcactccttttaattcaattccgac-aacgggtcca-tttttttc |
41432035 |
T |
|
| Q |
331 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
430 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41432036 |
atggcagcaagtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggc |
41432135 |
T |
|
| Q |
431 |
gacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaac |
530 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41432136 |
agcaagaatcagaaatggactccaggtgtttcgacaatgctacaagttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaac |
41432235 |
T |
|
| Q |
531 |
ctggatgggcaccttcaaagggcacaccgggcggtgaagctagttccctgcagtat |
586 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||| | ||||||||||||| |
|
|
| T |
41432236 |
ctggatgggcaccttcgaagggcaaaccgggtggtgaagcgaattccctgcagtat |
41432291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 52 - 536
Target Start/End: Original strand, 41442368 - 41442848
Alignment:
| Q |
52 |
attgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctg |
151 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
41442368 |
attgcttaacctgaccatttctgtc--ttttttctttaatgctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctg |
41442465 |
T |
|
| Q |
152 |
tgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| |||||| |
|
|
| T |
41442466 |
tgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggtta |
41442565 |
T |
|
| Q |
252 |
aggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactacca |
351 |
Q |
| |
|
|| |||||||||||||| |||||| |||||| ||| |||| ||| |||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
41442566 |
agaatactttatctgacagacgttgttttcttgttaactctttttaattcaattctaacaaaagggtc--gttattttcgtggcagctagtccactacca |
41442663 |
T |
|
| Q |
352 |
ctctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggact |
451 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
41442664 |
ctctagaggtcttcgactcaaccctaatttgtatggctgtggtaaagtatgcctcagtctacttaacacctggtctggcgacagaaatcagatgtgggct |
41442763 |
T |
|
| Q |
452 |
ccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaacctggat |
536 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
41442764 |
ccaggtgtttcgacaatgctacaggttctagtctccataaaaggtctaatcttgaacgcgaagccttactataatgaacctggat |
41442848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 533
Target Start/End: Original strand, 41426345 - 41426844
Alignment:
| Q |
32 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
130 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41426345 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctttcacttttttcattaattctcatcagatacaatatttgtgagagtctgtgaatcaa |
41426444 |
T |
|
| Q |
131 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41426445 |
ggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtcttttcttttttgatgtttactttccccctggatatcccaa |
41426544 |
T |
|
| Q |
231 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
330 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| || | | | |
|
|
| T |
41426545 |
tgaacccccggtatgtggttgagaatactttatttggccgatatta-tttcttgttcactctttttaattcaattccgacaaa-tgat-aactttttttc |
41426641 |
T |
|
| Q |
331 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
430 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | |||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
41426642 |
gtggcagcaagtccactaccattctggaggtcttggactcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
41426741 |
T |
|
| Q |
431 |
gacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaac |
530 |
Q |
| |
|
||| | || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
41426742 |
gacgaggatgagatgtggactccaggtgtttcaacaatgctacaagttctagtctccatacaaggtctaatcttgaacgcaaagccttactttaatgaac |
41426841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 330 - 536
Target Start/End: Original strand, 41449250 - 41449456
Alignment:
| Q |
330 |
catggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcagg |
429 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||| || |
|
|
| T |
41449250 |
catggcagcaagtccattaccactctggcggccttgggctcaaccctaatttgtatgcttctgggaaagtatccctcagtctacttgacacctggtttgg |
41449349 |
T |
|
| Q |
430 |
cgacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaa |
529 |
Q |
| |
|
| |||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
41449350 |
caacaaggatcagaaatggactccaggtgtttcaacaatgctacaggttctagtctccatacaaggtctaatcttgaacgcaaagccttactataatgaa |
41449449 |
T |
|
| Q |
530 |
cctggat |
536 |
Q |
| |
|
||||||| |
|
|
| T |
41449450 |
cctggat |
41449456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 41453658 - 41453772
Alignment:
| Q |
86 |
tttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatga |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41453658 |
tttaatgctcatcagatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccatga |
41453757 |
T |
|
| Q |
186 |
tggtcttttcttttt |
200 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
41453758 |
cggtcttttattttt |
41453772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 41448905 - 41449006
Alignment:
| Q |
160 |
ggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttt-ccccctggatatcccaatggacccccggtatgtggttgaggatac |
258 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
41448905 |
ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatac |
41449004 |
T |
|
| Q |
259 |
tt |
260 |
Q |
| |
|
|| |
|
|
| T |
41449005 |
tt |
41449006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 52472991 - 52473046
Alignment:
| Q |
124 |
gaatcaaggatggatctcatgagggctgtgattattggagcagaagggactcctta |
179 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| || |||||||| |
|
|
| T |
52472991 |
gaatcaaggatggatctcttgagggctgtaattattggagcagatggaactcctta |
52473046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 7237942 - 7237890
Alignment:
| Q |
470 |
ctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttactt |
522 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
7237942 |
ctacaggttatagtctccatacaaggtctagtcttgactgcaaaaccttactt |
7237890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 32 - 536
Target Start/End: Original strand, 5833 - 6335
Alignment:
| Q |
32 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
130 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5833 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
5932 |
T |
|
| Q |
131 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
230 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5933 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaa |
6032 |
T |
|
| Q |
231 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
330 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |
|
|
| T |
6033 |
tgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttc |
6129 |
T |
|
| Q |
331 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
430 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
6130 |
gtggcagcaagtccactaccattctggaggtcttggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
6229 |
T |
|
| Q |
431 |
gacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaac |
530 |
Q |
| |
|
||| | || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6230 |
gacgaggatgagatgtggactccaggtgtttcaacaatgctacaagttctagtctccatacaaggtctaatcttgaacgcaaagccttactttaatgaac |
6329 |
T |
|
| Q |
531 |
ctggat |
536 |
Q |
| |
|
|||||| |
|
|
| T |
6330 |
ctggat |
6335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 32 - 536
Target Start/End: Complemental strand, 17625 - 17123
Alignment:
| Q |
32 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
130 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17625 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
17526 |
T |
|
| Q |
131 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
230 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17525 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaa |
17426 |
T |
|
| Q |
231 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
330 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |
|
|
| T |
17425 |
tgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttc |
17329 |
T |
|
| Q |
331 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
430 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
17328 |
gtggcagcaagtccactaccattctggaggtcttggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
17229 |
T |
|
| Q |
431 |
gacaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaac |
530 |
Q |
| |
|
||| | || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17228 |
gacgaggatgagatgtggactccaggtgtttcaacaatgctacaagttctagtctccatacaaggtctaatcttgaacgcaaagccttactttaatgaac |
17129 |
T |
|
| Q |
531 |
ctggat |
536 |
Q |
| |
|
|||||| |
|
|
| T |
17128 |
ctggat |
17123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 56 - 270
Target Start/End: Complemental strand, 7763139 - 7762925
Alignment:
| Q |
56 |
ctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgat |
155 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7763139 |
ctcaacctgaccatttatttgacttttttctttaatgctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgat |
7763040 |
T |
|
| Q |
156 |
tattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgagga |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||| |||||||| |
|
|
| T |
7763039 |
tattggagcacaagggactccttaccatgatggtcttttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttgaaac |
7762940 |
T |
|
| Q |
256 |
tactttatctgactg |
270 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7762939 |
tactttatctgactg |
7762925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 332 - 528
Target Start/End: Complemental strand, 7762885 - 7762689
Alignment:
| Q |
332 |
tggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcg |
431 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||| || |||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
7762885 |
tggcagcaactcgactaccactctggtggtcttgggctcaatccaaatttgtatgaaaatggctatgtatgcctcagtctacttaacacctgggttggcg |
7762786 |
T |
|
| Q |
432 |
acaaaaatcagatgtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatga |
528 |
Q |
| |
|
|| | || |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7762785 |
acgacgatgagatgtggactccaggtgtttcgacaatgcatcaggttctcgtctccatacaaggtctaatcttgaatgcaaagccttactttaatga |
7762689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 345 - 536
Target Start/End: Complemental strand, 21223715 - 21223524
Alignment:
| Q |
345 |
actaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagat |
444 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||| ||||||||||| || || || ||||||||||||||||| ||| | || ||| ||| |
|
|
| T |
21223715 |
actaccactctggtggacttcgactcaacccaaatttatataattgtggcaaagtttgtcttagcctacttaacacctggtctggcaataagaatgagaa |
21223616 |
T |
|
| Q |
445 |
gtggactccatgtgtttcgacaatgctacaggttctagtctccatacaaggtctaatcttgaatgcaaagccttacttcaatgaacctggat |
536 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21223615 |
gtggctcccaggtgtttcaacaattttacaggtcctggtctccatacaaggtctaatcttgaatacaatgccttactttaatgagcctggat |
21223524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 21223965 - 21223819
Alignment:
| Q |
99 |
agatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttt |
198 |
Q |
| |
|
|||| |||||||||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| || || ||||| |||||||| || |||||| |
|
|
| T |
21223965 |
agattcaatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttt |
21223866 |
T |
|
| Q |
199 |
tttgatgtttactttccccctggatatcccaatggacccccggtatg |
245 |
Q |
| |
|
|||||| ||| ||||||| ||| | |||||||| ||| |||||||| |
|
|
| T |
21223865 |
tttgattttttctttcccagtggctttcccaatgtacctccggtatg |
21223819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 1004661 - 1004793
Alignment:
| Q |
125 |
aatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggata |
224 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||||||||| || |||||||||||||||| | |||||||||||||||||| ||||||| || | || |
|
|
| T |
1004661 |
aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaacta |
1004760 |
T |
|
| Q |
225 |
tcccaatggacccccggtatgtggttgaggata |
257 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| |
|
|
| T |
1004761 |
tcccattgtacccccggtatgtcgttgaggata |
1004793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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