View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15101_low_6 (Length: 447)
Name: NF15101_low_6
Description: NF15101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15101_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 9427796 - 9428226
Alignment:
| Q |
1 |
caatttacagggagcaaaaatgcatttaactttgttttggtgtacaggagcaaaaattataaggttggaattccaaataattccaaacaattatttgttt |
100 |
Q |
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| T |
9427796 |
caatttacagggagcaaaaatgcatttaactttgttttggtgtacaggagcaaaaattataaggttggaattccaaataattccaaacaattatttgttt |
9427895 |
T |
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| Q |
101 |
tgattaatgaattaacattgtcatcaactctctattttccaaagaaatttacctaaccaacatgtaactgctcattataaccgaaaagaannnnnnncct |
200 |
Q |
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| T |
9427896 |
tgattaatgaattaacattgtcatcaactatctattttccaaagaaatttacctaaccaacatgtaactgctcattataaccgaaaagaatttttttcct |
9427995 |
T |
|
| Q |
201 |
atgcatatgaagacctcaattttctttcttatattacacacaggttgcaactttggcaccaaatactccagcacactatgagcttcattttggtgtacca |
300 |
Q |
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| T |
9427996 |
atgcatatgaagacctcaattttctttcttatattacacacaggttgcaactttggcaccaaatactccagcacactatgagcttcattttggtgtacca |
9428095 |
T |
|
| Q |
301 |
atggcaggtgctattatttcttcacttaacctcaaactagatgcaacaacattagcattaatattggaacaattagagtcttgcaaaatcatatttgtag |
400 |
Q |
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| T |
9428096 |
atggcaggtgctattatttcttcacttaacctcaaactagatgcaacaacattagcattaatattggaacaattagagtcttgcaaaatcatatttgtag |
9428195 |
T |
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| Q |
401 |
actatgagtttattgattctgtactcaaagc |
431 |
Q |
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| T |
9428196 |
actatgagtttattgattctgtactcaaagc |
9428226 |
T |
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