View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15102_low_2 (Length: 397)
Name: NF15102_low_2
Description: NF15102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15102_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 391
Target Start/End: Original strand, 4333471 - 4333846
Alignment:
| Q |
21 |
gtccaaaaacaaatcaatatatttgacttaaactagtatatggattgaaaattcatatatgcttagggtcatgttttannnnnnnggtgaaaaagtatca |
120 |
Q |
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| T |
4333471 |
gtccaaaaacaaatcaatatatttgacttaaactagtatttggattgaaaattcatatatgcttagggtcatgttttatttttttggtgaaaaaatatta |
4333570 |
T |
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| Q |
121 |
acatgtagta----ataggtaggtagtattggtaacaacctaataa-ttttttgtcaaaaacaaatcaatatatttcactttaattgtgaattttcaatt |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4333571 |
acatgtagtactagctaggtaggtagtattggtaacaacctaataatttttttgtcaaaaacaaatcaatatatttcactttaattgtgaattttcaatt |
4333670 |
T |
|
| Q |
216 |
aacaattaaaaataannnnnnnaaggtacacctcttaactttgaaaatttggataaccataaccttcttctcatttcttatagtgctaaaaggaatgagg |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4333671 |
aacaattaaaaataatttttttaaggtacacctcttaactttgaaaatttggataaccataaccttcttctcatttcttatagtgctaaaagaaatgagg |
4333770 |
T |
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| Q |
316 |
aaccattatctcgcattgtcgtctacttttagcatctcaaatcaactatacattttcgttaataaggttgttcata |
391 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4333771 |
aaccattatctcgcattgtcgcctactcttagcatctcaaatcaactatacattttcgttaataaggttgttcata |
4333846 |
T |
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