View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15102_low_3 (Length: 396)
Name: NF15102_low_3
Description: NF15102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15102_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 196 - 378
Target Start/End: Original strand, 41535351 - 41535528
Alignment:
| Q |
196 |
gtcagcaggtacgggaagaagaaagcaatgggatgacgatctgttgaccatgacctcagtaactttgtctttcagcggagagcaaagagtctaaactaaa |
295 |
Q |
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| T |
41535351 |
gtcagcaggtacgggaagaagaaagcaatgggatgacgatctgttgaccatgacctcggtaactttgtctttcagcggagagcaaagagt-----ctaaa |
41535445 |
T |
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| Q |
296 |
ctctcgaaactcgcattgcttaaacctccgttggataagtgtttgccaaaccaataccgcttcgcaaagcatggtggttgtgg |
378 |
Q |
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| T |
41535446 |
ctctcgaaactggcattgcttaaacctccgttggataagtgtttgccaaaccaataccgcttcgcaaagcatggtggttgtgg |
41535528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 41535161 - 41535323
Alignment:
| Q |
1 |
gttaaatttaaataaaaagcactgtaccgagttcaaaagaagaaactgtgcagtactaaaccagaacgacaaaaacaattaattgtatcattattcttat |
100 |
Q |
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| T |
41535161 |
gttaaatttaaataaaaagcactgtaccgagttcaaaagaagaaactgtgcagtactaaaccagaacgacaaaaacaattaatggtatcattattcttat |
41535260 |
T |
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| Q |
101 |
ttatggtaagtacaaatttatagtagttagtagttacaggaactaaaggaatggagtatcatttttctttt |
171 |
Q |
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| T |
41535261 |
ttatggtaagtacaaatttatagtag--------tacaagaactaaaggaatggagtatcatttttctttt |
41535323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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