View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15103_high_1 (Length: 427)
Name: NF15103_high_1
Description: NF15103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15103_high_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 427
Target Start/End: Original strand, 3331941 - 3332339
Alignment:
| Q |
29 |
accaccaccttgaagttgttgaatagaagaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaaca |
128 |
Q |
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| T |
3331941 |
accaccaccttgaagttgttgaatagaagaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaaca |
3332040 |
T |
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| Q |
129 |
ggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcag |
228 |
Q |
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| T |
3332041 |
ggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcag |
3332140 |
T |
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| Q |
229 |
gtggtggaagaaacgatccagccagcgaacgaatctcgaaccttccatgaagtgtaacaacagccccaggagaagccggttgccttagtgtcgcgtttgt |
328 |
Q |
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| T |
3332141 |
gtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagccggttgccttagtgtcacgtttgt |
3332240 |
T |
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| Q |
329 |
aaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacgtctcaaccgtctgcaacttccat |
427 |
Q |
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| T |
3332241 |
aaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccat |
3332339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
123 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
196 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
125 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
193 |
Q |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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