View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15103_high_2 (Length: 352)
Name: NF15103_high_2
Description: NF15103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15103_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 29584737 - 29585081
Alignment:
| Q |
14 |
caagtggcatcatgaaatcttgtagtttttcttttcaatttcagtaatcaagcaaatgttgtaaatgtcttcattgttatagttacaaatctaggaactc |
113 |
Q |
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| T |
29584737 |
caagtggcatcatgaaatcttgtagtttttcttttcaatttcagtaatcaagcaaatgttgtaaatgtcttcattgttatagttacaaatctaggaactc |
29584836 |
T |
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| Q |
114 |
ttcctaagcatgaaaatacaagatcaaagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacatac |
213 |
Q |
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| T |
29584837 |
ttcctaagcatgaaaatacaagatcaaagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacatac |
29584936 |
T |
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| Q |
214 |
atctaaaaacaatatnnnnnnnctaatagtgcagattaaacccaatgttagtcannnnnnnatttgatgcagtaccaagacatagagaatggatttag-- |
311 |
Q |
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| T |
29584937 |
atctaaaaacaatatacagcaactaacagtgcagattaaacccaatgttagtca-tttttaatttgatgcagtactaagacagagagaatggatttaggg |
29585035 |
T |
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| Q |
312 |
-----ggtgagagtacacaccttatataaatgatgatgtccatctc |
352 |
Q |
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| T |
29585036 |
tgagaggtgagagtacacaccttatataaataatgatatacatctc |
29585081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 4426524 - 4426698
Alignment:
| Q |
21 |
catcatgaaatcttgtagtttttcttttcaatttcagtaatcaagcaaatgttgtaaatgtcttcattgttatagttacaaatctaggaactcttcctaa |
120 |
Q |
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| T |
4426524 |
catcatgaaatcttgtagtttttcttttcaatttgagtaatcaggtaaatgttgtcattttctttattgttatagttaaaaatctagcacctcttgctaa |
4426623 |
T |
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| Q |
121 |
--gcatgaaaat-acaagatcaaagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaatat |
192 |
Q |
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| T |
4426624 |
ttgcatgaaaataactagaacaaagaaaatttagaaactttcagggtatggtattatctaatccctccacaatat |
4426698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 4444536 - 4444465
Alignment:
| Q |
140 |
aagaaaatttagaaactttaggtgtatggtatcatgtaattcaaccacaatatgattgaaatctggtgacat |
211 |
Q |
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| T |
4444536 |
aagaaaatttagaaactttgaaggtatggtattatgtaattccaccgcaatataattgaaatatagtgacat |
4444465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 6184221 - 6184188
Alignment:
| Q |
29 |
aatcttgtagtttttcttttcaatttcagtaatc |
62 |
Q |
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| T |
6184221 |
aatcttgtagtttttcttttcaatttcagtaatc |
6184188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 9009840 - 9009879
Alignment:
| Q |
15 |
aagtggcatcatgaaatcttgtagtttttcttttcaattt |
54 |
Q |
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| T |
9009840 |
aagttgcattatgaaatcttgtagtttttcttttcaattt |
9009879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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