View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15103_low_3 (Length: 308)
Name: NF15103_low_3
Description: NF15103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15103_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 19524573 - 19524861
Alignment:
| Q |
17 |
catatttttattgatttgatgttatgctttgttgatcagcttcattggtttaatacaggttttattccatgtttttggccattttcaactggactaagga |
116 |
Q |
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| T |
19524573 |
catatttttattgatttgatgttatgctttgttgatcagcttcattggtttaatacatgttttattccatgtttttggccattttcaactggactaagga |
19524672 |
T |
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| Q |
117 |
aggctcattctatgtttatttaagattatctcatataatgaatatggcac----ttgcgtcaattctatcatattatgatggtgatataagatgtattta |
212 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19524673 |
aggctcattctatgtttatttaagattatctcatccaatgaatatggcacgagctcgcatcaattctatcatattatgatggtgatataagatgtattta |
19524772 |
T |
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| Q |
213 |
atcctacttttagtttcat---ttgtgggttagctttgatcatattaggtcatgtcatattttcatcctttctacactgctatcctttg |
298 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19524773 |
atcctacttttagtttcattaattgggggttagctttgatcatattaggtcatgtcatattttcatcctttctacactgctatcttttg |
19524861 |
T |
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