View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15103_low_4 (Length: 234)
Name: NF15103_low_4
Description: NF15103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15103_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 32924840 - 32924690
Alignment:
| Q |
55 |
acgagatacagagatataagaggagcccccattgatggcaatacaatcatcacctgtttataagaaaaccaactcattttaaaattgcacatatatatta |
154 |
Q |
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| T |
32924840 |
acgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctatttataagaaaaccaactcattttaaaattgcacatatatatta |
32924741 |
T |
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| Q |
155 |
aactcatctcaaaatacttaaattgaggtttataagataaaaataaacttt |
205 |
Q |
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| T |
32924740 |
aactcatctcaaaatacttaaattaaggtttataagataaaaataaacttt |
32924690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 11658423 - 11658555
Alignment:
| Q |
3 |
aaatacacagtattgaaaataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagcccccattgatggcaatacaatc |
102 |
Q |
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||||||| | ||| |||||||||||||||||||| ||| ||||||| |||| ||||| | ||| |||||||| || | |||| |||||||||||| |
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| T |
11658423 |
aaatacaaattatagaaaataaccttatcccatgacctagtccacaagcaatacgagtagcgctgatgtaagaggaaccttctttgacggcaatacaatc |
11658522 |
T |
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| Q |
103 |
atcacctgtttataagaaaaccaactcatttta |
135 |
Q |
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| T |
11658523 |
atcacctgtttatacgaaagtcaactcatttta |
11658555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 2525171 - 2525046
Alignment:
| Q |
21 |
ataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagcccccattgatggcaatacaatcatcacctgtttataagaa |
120 |
Q |
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| T |
2525171 |
ataaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaa |
2525072 |
T |
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| Q |
121 |
aaccaactcattttaaaattgcacat |
146 |
Q |
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| T |
2525071 |
ataaaattcattttaaaattggacat |
2525046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 2541836 - 2541793
Alignment:
| Q |
72 |
aagaggagcccccattgatggcaatacaatcatcacctgtttat |
115 |
Q |
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| T |
2541836 |
aagaggagccaccattgatggcaatacaatcatcacctgtttat |
2541793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 32925547 - 32925513
Alignment:
| Q |
20 |
aataaccttatcccatggcctggtccacatgcaac |
54 |
Q |
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| T |
32925547 |
aataaccttatcccatggcctggtccacatgcaac |
32925513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 2550152 - 2550053
Alignment:
| Q |
23 |
aaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagcccccattgatggcaatacaatcatcacctgtttataagaaaa |
122 |
Q |
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|||||||||||||||||||||||||| | ||| |||| || |||| ||| |||||| ||||| | ||||||||||| |||||| |||| ||||||| |
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| T |
2550152 |
aaccttatcccatggcctggtccacaagtaacccgagtagcattgataaaagtggagccaccatttactgcaatacaatcgtcacctatttaaaagaaaa |
2550053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 13558700 - 13558570
Alignment:
| Q |
19 |
aaataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagcccccattgatggcaatacaatcatcacctgtttataag |
118 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||||| || |||| |||||||| |||||||| | |||||||||||||||||||| ||| ||| |
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| T |
13558700 |
aaataaccttattccatgccctggaccacatgcaacacgagtagcatagatgtaagaggatcccccattaacggcaatacaatcatcacctgcttacaag |
13558601 |
T |
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| Q |
119 |
aaaaccaactcattttaaaattgcacatata |
149 |
Q |
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|||| ||||||| |||| ||||||||||||| |
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| T |
13558600 |
aaaagcaactcaatttataattgcacatata |
13558570 |
T |
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