View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15104_high_1 (Length: 580)
Name: NF15104_high_1
Description: NF15104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15104_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 563
Target Start/End: Complemental strand, 14067002 - 14066453
Alignment:
| Q |
11 |
cacagacactcttttcgaaccagcaagttgacccttttctccatccattatcataaattataaaatgctttattggtgaaataatgaaggttaaacttga |
110 |
Q |
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| T |
14067002 |
cacacacactcttttcgaaccaacaagttgacccttttctccatccattatcataaattataaaatgctttattggtgaaataatgaaggttaaacttga |
14066903 |
T |
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| Q |
111 |
cttagaggttgatgttaaattgcaattgattttattgaacgttgaagnnnnnnnnnnnnnnnnnnntttagggaatagcacttcagaagataagcaagat |
210 |
Q |
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| T |
14066902 |
cttagaggttgatgttaaattgcaattgatttgattgaacattgaagtgatgatgatgataat---tttagggagcagcacttcagaagataagcaagat |
14066806 |
T |
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| Q |
211 |
caaattcctgattctgatatcaggtgccaagtttggtggcatgaactgcggaacacctaaactagcttccaatgcattttcaaaaccaattgattgtccc |
310 |
Q |
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| T |
14066805 |
caaattcctgattctgatatcaggtgccaagtttggtggcatgaactacggaacacctaaactagcttccaatgcattttcaaaaccaattgattgtccc |
14066706 |
T |
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| Q |
311 |
tctcttcacattataggtagtttcaataaacaatctcttctaattattttttcaatcaaattttcctttacattttgccttgaaaagtcacattggtatc |
410 |
Q |
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| T |
14066705 |
tctcttcacattataggtagtttcaataaacagtctcttctaattattttttaaatcaaattttcctttacattttgccttgaaaagtcacattggtatc |
14066606 |
T |
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| Q |
411 |
ttatattgtttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaaggggacatggatttcttgaagccggaaagcattatt |
510 |
Q |
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| T |
14066605 |
ttatattgtttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaaggggacatggatttcttgaagccggaaagcattatt |
14066506 |
T |
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| Q |
511 |
ttgcgagaggcttttgtcgaccctgttgtgattcatcatccaaaaggacatac |
563 |
Q |
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| T |
14066505 |
ttgcgagagggttttgtcgaccctgttgtgattcatcatccaaaaggacatac |
14066453 |
T |
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