View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15104_high_3 (Length: 391)
Name: NF15104_high_3
Description: NF15104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15104_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 32444771 - 32445138
Alignment:
| Q |
15 |
acaaataactaaaatgctctatgttgtgtgtctttgttgcttagaatagcaaggataacctctttatatata--cggacaagtgttgtctaatgtcttgt |
112 |
Q |
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| T |
32444771 |
acaaataactaaaatgctctatgttgtgtgtctttgttgcttagaatagcaaggataacctctttatatatatacagacaagtgttgtctaatgtcttgt |
32444870 |
T |
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| Q |
113 |
ctctctattagttttggattcctctttctatctattgtgtttaatttgttttgtataagtgacaaatgcatattgttttaaataattggattataagcta |
212 |
Q |
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| T |
32444871 |
ctctcttttggttttggattcctctttctatctattgtgtttaatttgttttgtataaatgacaaatgcatattgttttaaataattggattataagcta |
32444970 |
T |
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| Q |
213 |
gttttggttggtttttgctctcattaaacatgaattgataccgaccaaacccattcataaattgtcctttccacgatagaccttgaattcagatagagta |
312 |
Q |
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| T |
32444971 |
gttttggttggtttttgctctcattaaacatgaattgataccgaccaaacccattcagaaattgtcctttccacgatagaccttgaattcagatagagta |
32445070 |
T |
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| Q |
313 |
aagnnnnnnngtaaccccatctgaaatttgcatcaatttacataacatgatgaaagtgtttgggttct |
380 |
Q |
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| T |
32445071 |
aagaaaaaaagtagccccatctgaaatctgcatcaatttacataacatgatgaaagtgtttgggttct |
32445138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 32438210 - 32438325
Alignment:
| Q |
185 |
ttgttttaa-ataattggattataagctagttttggttggtttttgctctcattaaacatgaattgat------accgaccaaacccattcataaattgt |
277 |
Q |
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| T |
32438210 |
ttgttttaatataattggatta--agctagttttggtttgtttttgctctcattaaacatgaatagatgtttaaaccgaccaaacccattcataaattgt |
32438307 |
T |
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| Q |
278 |
cctttccacgatagacct |
295 |
Q |
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| T |
32438308 |
cctttccacgatagacct |
32438325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 32437977 - 32438046
Alignment:
| Q |
124 |
ttttggattcctctttctatctattgtgtttaatttgttttgtataagtgacaaatgcatattgttttaa |
193 |
Q |
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| T |
32437977 |
ttttggattcctcttcatatctgttgtgtataatttgttttgtataagtgacaaatgcatattgttttaa |
32438046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 32438373 - 32438425
Alignment:
| Q |
328 |
cccatctgaaatttgcatcaatttacataacatgatgaaagtgtttgggttct |
380 |
Q |
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| T |
32438373 |
cccacctgaaatttgcatcaatttacatagcatgatgaaagtgtttgggttct |
32438425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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