View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15104_low_2 (Length: 464)
Name: NF15104_low_2
Description: NF15104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15104_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 28588016 - 28587625
Alignment:
| Q |
13 |
attatactgaattaatgttttttagtttacacctaggattatgtgtagtatatatattaacatagataaaaacatggttcctacagtgtaagaaatgatc |
112 |
Q |
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| T |
28588016 |
attatactgaattaatgttttttagcttacacctaggattatgtgtaatatatatattaacatagataaaaacatggttcctacagtgtaagaaatgatc |
28587917 |
T |
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| Q |
113 |
tgcctacattgtaactaaaaggttaggctcattaagcggtatgaacttcaaaccggacaaagttgattagttacgccgcaaactacacatcgctgtaaat |
212 |
Q |
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| T |
28587916 |
tgcctacattgtaactaaaaggttaggctcattaagcggtatgaacttcaaaccagacaaagttgattagttacgccgcaaactatacatcgctgtaaat |
28587817 |
T |
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| Q |
213 |
attagttggtgcggtcgcaattgtggttagaa-gttcttcaaagacttgtataccttttatattgcagttgtaattgtagttgttgaccgcaatttagaa |
311 |
Q |
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| T |
28587816 |
a-tagttggtgcggccgcaattgtggttacaatgttctgcaaagacttgtataccttttatattgcagttgtaattgtagttgttgaccgcaatttagaa |
28587718 |
T |
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| Q |
312 |
ccatgctcataagactaatttggttaggactttattaattgcattgcaaggtattttgaaaccatacgtagagttcagctcaagttatctttc |
404 |
Q |
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| T |
28587717 |
ccatgctcataagactaatttggttgggactttattaattgcattgcaaggtattttgaaaccatacgtagacttcagctcaagttatctttc |
28587625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 34257675 - 34257636
Alignment:
| Q |
425 |
tgctaattgagaataagttgttgattttttgtgcacctta |
464 |
Q |
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| T |
34257675 |
tgctaattgagaatatgttgttgattttttgtgcacctta |
34257636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 26543590 - 26543541
Alignment:
| Q |
268 |
tttatattgcagttgtaattgtagttgttgaccgcaatttagaaccatgc |
317 |
Q |
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| T |
26543590 |
tttatattgcggttgcaattgtagttgcagaccgcaatttagaactatgc |
26543541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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