View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15104_low_4 (Length: 339)

Name: NF15104_low_4
Description: NF15104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15104_low_4
NF15104_low_4
[»] chr6 (7 HSPs)
chr6 (237-339)||(34100656-34100758)
chr6 (135-224)||(12477594-12477683)
chr6 (135-224)||(1707127-1707216)
chr6 (135-224)||(9816443-9816531)
chr6 (136-221)||(8024932-8025016)
chr6 (5-49)||(1707301-1707345)
chr6 (5-49)||(12477465-12477509)
[»] chr7 (4 HSPs)
chr7 (135-225)||(24800438-24800528)
chr7 (135-224)||(22015388-22015477)
chr7 (135-224)||(22711102-22711191)
chr7 (1-50)||(24800612-24800661)
[»] scaffold0554 (1 HSPs)
scaffold0554 (135-224)||(10830-10919)
[»] chr4 (1 HSPs)
chr4 (135-224)||(41416166-41416255)
[»] chr8 (1 HSPs)
chr8 (135-224)||(6831180-6831269)
[»] scaffold0054 (1 HSPs)
scaffold0054 (135-224)||(15988-16077)
[»] chr3 (3 HSPs)
chr3 (135-224)||(27967800-27967889)
chr3 (135-224)||(18159353-18159441)
chr3 (135-224)||(28672554-28672642)
[»] chr5 (3 HSPs)
chr5 (140-224)||(25218792-25218876)
chr5 (140-224)||(25282947-25283031)
chr5 (135-224)||(15283716-15283804)
[»] chr2 (2 HSPs)
chr2 (135-224)||(24225214-24225302)
chr2 (136-224)||(11703679-11703767)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 34100656 - 34100758
Alignment:
Q  237 aacaatgctttagattcaaacaatttttattattttctttgtctaaatttgagttctttttaatattaatttgcatacccacagaagtcggtggcgaaga 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34100656 aacaatgctttagattcaaacaatttttattattttctttgtctaaatttgagttctttttaatattaatttgcatacccacagaagtcggtggcgaaga 34100755  T
Q  337 tgt 339  Q
    |||    
T  34100756 tgt 34100758  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 12477594 - 12477683
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12477594 ggttttaatgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 12477683  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 1707216 - 1707127
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  1707216 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggctgtagggacagggcccttttcttgtagtg 1707127  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 9816531 - 9816443
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9816531 ggttttaatgacggtttttcatatgtccgttggtaaaa-ctaccccgctttggaaaatggccgtagggacagggcacttttcttgtagtg 9816443  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 8025016 - 8024932
Alignment:
Q  136 gttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgta 221  Q
    |||||||||||||||||  ||| |||| |||||||||||  ||| ||| | |||||||||| |||||||||| |||||||||||||    
T  8025016 gttttagtgacagttttctataggtccattggtaaaaacgtccc-gctctggaaaatggccttagggacaggccacttttcttgta 8024932  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 1707345 - 1707301
Alignment:
Q  5 tgagttttgagattgacgagggtgtgtgaatggtacgtgtttgtg 49  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  1707345 tgagatttgagattgatgagcgtgtgtgaatggtacgtgtttgtg 1707301  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 12477465 - 12477509
Alignment:
Q  5 tgagttttgagattgacgagggtgtgtgaatggtacgtgtttgtg 49  Q
    |||| ||||||||||| ||| |||||||||||||| |||||||||    
T  12477465 tgagatttgagattgatgagcgtgtgtgaatggtatgtgtttgtg 12477509  T

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Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 24800528 - 24800438
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtgg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24800528 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtgg 24800438  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 22015388 - 22015477
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22015388 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 22015477  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 22711102 - 22711191
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22711102 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 22711191  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24800661 - 24800612
Alignment:
Q  1 attttgagttttgagattgacgagggtgtgtgaatggtacgtgtttgtgg 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24800661 attttgagatttgagattgacgagggtgtgtgaatggtacgtgtttgtgg 24800612  T

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Target: scaffold0554 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 10919 - 10830
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10919 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccctgctttagaaaatggccgtagggacagggcacttttcttgtagtg 10830  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 41416255 - 41416166
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41416255 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccactttagaaaatggccgtagggacagggcacttttcttgtagtg 41416166  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 6831180 - 6831269
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6831180 ggttttaatgacagtttttcatatgtccgttggtaaaaactaccccgctttaaaaaatggccgtagggacagggcacttttcttgtagtg 6831269  T

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Target: scaffold0054 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 15988 - 16077
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15988 ggttttagtgacagttttttatatatccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgcagtg 16077  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 27967800 - 27967889
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27967800 ggttttaatgacggtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggatagggcacttttcttgtagtg 27967889  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 18159353 - 18159441
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  18159353 ggttttagtgacagtttttcatatgtccgttggtaaaaacta-cccgctttaaaaaatggctgtagggacagggtacttttcttgtagtg 18159441  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 28672554 - 28672642
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  28672554 ggttttaatgacggtttttcatatgtccgttggtaaaaactaccccgctttggaaaatggccgtagggacagggca-ttttcttgtagtg 28672642  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 25218876 - 25218792
Alignment:
Q  140 tagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218876 tagtgacggtttttcatatgtctgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 25218792  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 25283031 - 25282947
Alignment:
Q  140 tagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25283031 tagtgacggtttttcatatgtctgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 25282947  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 15283716 - 15283804
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  15283716 ggttttagtgacagtttttcatatgtccgttggtaaaaacta-cccgctttaaaaaatggctgtagggacagggtacttttcttgtagtg 15283804  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 24225214 - 24225302
Alignment:
Q  135 ggttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  24225214 ggttttagtgacagtttttcatatgtccgttggtaaaaacta-cccgctttaaaaaatggctgtagggacagggtacttttcttgtagtg 24225302  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 11703679 - 11703767
Alignment:
Q  136 gttttagtgacagtttttcatatgtccgttggtaaaaactaccccgctttagaaaatggccgtagggacagggcacttttcttgtagtg 224  Q
    ||||||||||| ||||||||||||||||||| ||||| ||| || ||||| |||||||||  |||||||||| ||||||||||||||||    
T  11703679 gttttagtgacggtttttcatatgtccgttgctaaaagctatcctgctttggaaaatggcattagggacaggccacttttcttgtagtg 11703767  T

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