View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15104_low_5 (Length: 317)

Name: NF15104_low_5
Description: NF15104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15104_low_5
NF15104_low_5
[»] chr5 (1 HSPs)
chr5 (1-294)||(31643975-31644267)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 31643975 - 31644267
Alignment:
Q  1 caaaccccacaaatctccatacctttggctgcaagaaccatctccaaatttgaacaacaatggacgtcattttatctcaagtttgtaaaaattgatttca 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  31643975 caaagcccacaaatctccatacctttggctgcaagaaccatctccaaatttgaacaacaatggacgtcattttgtttcaagtttgtaaaaattgatttca 31644074  T
Q  101 ccaatattgggtgagaatgagagcaaccttttataattggagtgtgagatgctactgttactatctcgcacaaaggtctaacgatttttccaatgattta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  31644075 ccaatattgggtgagaatgagagcaaccttttataattggagtgtgagatgctactgttactatctcgcacaaaggtctaacga-ttttccaatgagtta 31644173  T
Q  201 cgtggaaagttctaacctaaacccgtcaacgatggtcctacaaccttggtcttattaggctactgcggtacaaagaagttcaacaaagaattct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31644174 cgtggaaagttctaacctaaacccgtcaacgatggtcctacaaccttggtcttattaggctactgcggtgcaaagaagttcaacaaagaattct 31644267  T

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